ResDeepSurv: A Survival Model for Deep Neural Networks Based on Residual Blocks and Self-attention Mechanism

被引:1
作者
Wang, Yuchen [1 ]
Kong, Xianchun [2 ]
Bi, Xiao [3 ]
Cui, Lizhen [1 ]
Yu, Hong [4 ]
Wu, Hao [1 ]
机构
[1] Shandong Univ, Sch Software, Jinan 250101, Peoples R China
[2] Heze Municipal Hosp, Dept Pediat Surg, Heze 274000, Peoples R China
[3] Shandong Univ, Sch Math, Jinan 250100, Peoples R China
[4] Chongqing Univ Posts & Telecommun, Sch Comp Sci & Technol, Chongqing 400065, Peoples R China
关键词
Survival analysis; Deep learning; Covariates; Self-attention mechanism; BREAST-CANCER; COX REGRESSION; PERFORMANCE;
D O I
10.1007/s12539-024-00617-y
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Survival analysis, as a widely used method for analyzing and predicting the timing of event occurrence, plays a crucial role in the medicine field. Medical professionals utilize survival models to gain insight into the effects of patient covariates on the disease, and the correlation with the effectiveness of different treatment strategies. This knowledge is essential for the development of treatment plans and the enhancement of treatment approaches. Conventional survival models, such as the Cox proportional hazards model, require a significant amount of feature engineering or prior knowledge to facilitate personalized modeling. To address these limitations, we propose a novel residual-based self-attention deep neural network for survival modeling, called ResDeepSurv, which combines the benefits of neural networks and the Cox proportional hazards regression model. The model proposed in our study simulates the distribution of survival time and the correlation between covariates and outcomes, but does not impose strict assumptions on the basic distribution of survival data. This approach effectively accounts for both linear and nonlinear risk functions in survival data analysis. The performance of our model in analyzing survival data with various risk functions is on par with or even superior to that of other existing survival analysis methods. Furthermore, we validate the superior performance of our model in comparison to currently existing methods by evaluating multiple publicly available clinical datasets. Through this study, we prove the effectiveness of our proposed model in survival analysis, providing a promising alternative to traditional approaches. The application of deep learning techniques and the ability to capture complex relationships between covariates and survival outcomes without relying on extensive feature engineering make our model a valuable tool for personalized medicine and decision-making in clinical practice. [GRAPHICS] .
引用
收藏
页码:405 / 417
页数:13
相关论文
共 40 条
[1]   Semi-supervised methods to predict patient survival from gene expression data [J].
Bair, E ;
Tibshirani, R .
PLOS BIOLOGY, 2004, 2 (04) :511-522
[2]  
Chirag N, 2021, ARXIV
[3]  
COX DR, 1972, J R STAT SOC B, V34, P187
[4]   The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups [J].
Curtis, Christina ;
Shah, Sohrab P. ;
Chin, Suet-Feung ;
Turashvili, Gulisa ;
Rueda, Oscar M. ;
Dunning, Mark J. ;
Speed, Doug ;
Lynch, Andy G. ;
Samarajiwa, Shamith ;
Yuan, Yinyin ;
Graef, Stefan ;
Ha, Gavin ;
Haffari, Gholamreza ;
Bashashati, Ali ;
Russell, Roslin ;
McKinney, Steven ;
Langerod, Anita ;
Green, Andrew ;
Provenzano, Elena ;
Wishart, Gordon ;
Pinder, Sarah ;
Watson, Peter ;
Markowetz, Florian ;
Murphy, Leigh ;
Ellis, Ian ;
Purushotham, Arnie ;
Borresen-Dale, Anne-Lise ;
Brenton, James D. ;
Tavare, Simon ;
Caldas, Carlos ;
Aparicio, Samuel .
NATURE, 2012, 486 (7403) :346-352
[5]   A NEURAL-NETWORK MODEL FOR SURVIVAL-DATA [J].
FARAGGI, D ;
SIMON, R .
STATISTICS IN MEDICINE, 1995, 14 (01) :73-82
[6]  
Foekens JA, 2000, CANCER RES, V60, P636
[7]  
Fouodo CJK, 2018, R J, V10, P412
[8]   Survival analysis and regression models [J].
George, Brandon ;
Seals, Samantha ;
Aban, Inmaculada .
JOURNAL OF NUCLEAR CARDIOLOGY, 2014, 21 (04) :686-694
[9]   RECENT CHANGES IN ATTACK AND SURVIVAL RATES OF ACUTE MYOCARDIAL-INFARCTION (1975 THROUGH 1981) - THE WORCESTER HEART-ATTACK STUDY [J].
GOLDBERG, RJ ;
GORE, JM ;
ALPERT, JS ;
DALEN, JE .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 1986, 255 (20) :2774-2779
[10]  
Graf E, 1999, STAT MED, V18, P2529