Exploring the structural, photophysical and optoelectronic properties of a diaryl heptanoid curcumin derivative and identification as a SARS-CoV-2 inhibitor

被引:10
作者
Archana, Vikaraman P. [1 ,2 ]
Armakovic, Sanja J.
Armakovic, Stevan [3 ,4 ,9 ]
Celik, Ismail [5 ]
Bhagyasree, J. B. [1 ]
Babu, K. V. Dinesh [2 ]
Rudrapal, Mithun [6 ]
Divya, Indira S. [7 ]
Pillai, Renjith Raveendran [8 ,9 ]
机构
[1] Univ Kerala, Govt Coll, Dept Polymer Chem, Thiruvananthapuram, Kerala, India
[2] Univ Kerala, Govt Coll Women, Dept Chem, Thiruvananthapuram, Kerala, India
[3] Univ Novi Sad, Fac Sci, Dept Chem Biochem & Environm Protect, Trg D Obradovica 3, Novi Sad 21000, Serbia
[4] Univ Novi Sad, Fac Sci, Dept Phys, Trg D Obradovica 4, Novi Sad 21000, Serbia
[5] Erciyes Univ, Fac Pharm, Dept Pharmaceut Chem, TR-38280 Kayseri, Turkiye
[6] Deemed Univ, Vignans Fdn Sci Technol & Res, Sch Biotechnol & Pharmaceut Sci, Dept Pharmaceut Sci, Guntur 522213, India
[7] CSIR, Natl Inst Interdisciplinary Sci & Technol, Chem Sci & Technol Div, Thiruvananthapuram, India
[8] Univ Kerala, Univ Coll, Dept Phys, Thiruvananthapuram, Kerala, India
[9] Assoc Int Dev Acad & Sci Collaborat AIDASCO, Novi Sad, Serbia
关键词
Curcumin; XRD; UV-visible; DFT; Molecular dynamics; Molecular Docking; SURFACE ELECTROSTATIC POTENTIALS; MOLECULAR-DYNAMICS; QUANTITATIVE-ANALYSIS; EXCITED-STATE; FORCE-FIELD; IN-VITRO; SOLVENT; ABSORPTION; CHEMISTRY; ENERGIES;
D O I
10.1016/j.molstruc.2023.135110
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Developing modifiable natural products those having antiviral activities against SARS-CoV-2 is a key re-search area which is popular in current scenario of COVID pandemic. A diaryl heptanoid curcumin and its derivatives are already presenting promising candidates for anti-viral drug development. We have syn-thesized single crystals of a dimethylamino derivative of natural curcumin and structural characterization was done by single crystal XRD analysis. Using steady-state absorption and emission spectra and guided by complimentary ab initio calculations, we unraveled the solvent effects on the photophysical proper-ties of the dimethyl amino curcumin derivative. Chemical reactivity of the compound has investigated using frontier molecular orbitals and molecular electrostatic potential surface. High stability of the cur -cumin derivative in water environment has evaluated by Radial Distributions Functions (RDF) calculated via Molecular Dynamics (MD) simulations. The inhibitory activity of the title compound was evaluated by in silico methods and the stability of the protein-ligand complexes were studied using Molecular Dynamics simulations and MM-PBSA analysis. With this detailed study, we hope to motivate scientific community to develop new curcumin derivatives against SARS-CoV-2 virus.(c) 2023 Elsevier B.V. All rights reserved.
引用
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页数:16
相关论文
共 73 条
[1]   Optoelectronic properties of the newly designed 1,3,5-triazine derivatives with isatin, chalcone and acridone moieties [J].
Armakovic, Sanja J. ;
Mary, Y. Sheena ;
Mary, Y. Shyma ;
Pelemis, Svetlana ;
Armakovic, Stevan .
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2021, 1197
[2]   Optoelectronic properties of curved carbon systems [J].
Armakovic, Stevan ;
Armakovic, Sanja J. ;
Koziel, Slawomir .
CARBON, 2017, 111 :371-379
[3]   Optoelectronic properties of higher acenes, their BN analogue and substituted derivatives [J].
Armakovic, Stevan ;
Armakovic, Sanja J. ;
Holodkov, Vladimir ;
Pelemis, Svetlana .
MATERIALS CHEMISTRY AND PHYSICS, 2016, 170 :210-217
[4]   Curcumin for the Management of Periodontitis and Early ACPA-Positive Rheumatoid Arthritis: Killing Two Birds with One Stone [J].
Asteriou, Eleni ;
Gkoutzourelas, Athanasios ;
Mavropoulos, Athanasios ;
Katsiari, Christina ;
Sakkas, Lazaros I. ;
Bogdanos, Dimitrios P. .
NUTRIENTS, 2018, 10 (07)
[5]   Exploring the Photophysics of Curcumin in Zwitterionic Micellar System: An Approach to Control ESIPT Process in the Presence of Room Temperature Ionic Liquids (RTILs) and Anionic Surfactant [J].
Banerjee, Chiranjib ;
Ghosh, Surajit ;
Mandal, Sarthak ;
Kuchlyan, Jagannath ;
Kundu, Niloy ;
Sarkar, Nilmoni .
JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (13) :3669-3681
[6]   A NEW MIXING OF HARTREE-FOCK AND LOCAL DENSITY-FUNCTIONAL THEORIES [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (02) :1372-1377
[7]   Molecular dynamics simulations [J].
Binder, K ;
Horbach, J ;
Kob, W ;
Paul, W ;
Varnik, F .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2004, 16 (05) :S429-S453
[8]  
BIOVIA, 2019, DASS SYST BIOV DISC
[9]  
Bitencourt-Ferreira G, 2019, METHODS MOL BIOL, V2053, P93, DOI 10.1007/978-1-4939-9752-7_7
[10]   Jaguar: A high-performance quantum chemistry software program with strengths in life and materials sciences [J].
Bochevarov, Art D. ;
Harder, Edward ;
Hughes, Thomas F. ;
Greenwood, Jeremy R. ;
Braden, Dale A. ;
Philipp, Dean M. ;
Rinaldo, David ;
Halls, Mathew D. ;
Zhang, Jing ;
Friesner, Richard A. .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2013, 113 (18) :2110-2142