Complete genome sequence of invasive Streptococcus pneumoniae serotype 11A causing meningitis in an adult patient, Italy 2022

被引:0
作者
Amadesi, Stefano [1 ]
Vocale, Caterina [1 ]
Guariglia, Davide [1 ]
Cricca, Monica [1 ,2 ]
Lazzarotto, Tiziana [1 ,2 ]
Sambri, Vittorio [1 ,2 ]
Gaibani, Paolo [3 ]
机构
[1] IRCCS Azienda Osped Univ Bologna, Bologna, Italy
[2] Univ Bologna, Dept Med & Surg Sci, Alma Mater Studiorum, Bologna, Italy
[3] Univ Verona, Microbiol Sect, Dept Diagnost & Publ Hlth, I-37134 Verona, Italy
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 05期
关键词
gram positive; invasive infection; cerebrospinal fluid; Streptococcus pneumoniae; Italy;
D O I
10.1128/mra.00054-24
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Streptococcus pneumoniae is a major global health concern, being a common cause of meningitis in both children and adults. Here, we report the complete genome sequence of P10_PNE_LCR, a S. pneumoniae 11A strain isolated in Northern Italy from an adult patient diagnosed with meningitis.
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页数:3
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共 11 条
  • [1] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [2] Andrews S., 2010, FASTQC AQUALITY CONT
  • [3] RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
    Brettin, Thomas
    Davis, James J.
    Disz, Terry
    Edwards, Robert A.
    Gerdes, Svetlana
    Olsen, Gary J.
    Olson, Robert
    Overbeek, Ross
    Parrello, Bruce
    Pusch, Gordon D.
    Shukla, Maulik
    Thomason, James A., III
    Stevens, Rick
    Vonstein, Veronika
    Wattam, Alice R.
    Xia, Fangfang
    [J]. SCIENTIFIC REPORTS, 2015, 5
  • [4] Streptococcus pneumoniae meningitis and the CNS barriers
    Gil, Eliza
    Wall, Emma
    Noursadeghi, Mahdad
    Brown, Jeremy S.
    [J]. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2023, 12
  • [5] Whole genome sequencing of Streptococcus pneumoniae: development, evaluation and verification of targets for serogroup and serotype prediction using an automated pipeline
    Kapatai, Georgia
    Sheppard, Carmen L.
    Al-Shahib, Ali
    Litt, David J.
    Underwood, Anthony P.
    Harrison, Timothy G.
    Fry, Norman K.
    [J]. PEERJ, 2016, 4
  • [6] Assembly of long, error-prone reads using repeat graphs
    Kolmogorov, Mikhail
    Yuan, Jeffrey
    Lin, Yu
    Pevzner, Pavel A.
    [J]. NATURE BIOTECHNOLOGY, 2019, 37 (05) : 540 - +
  • [7] Fast and flexible bacterial genomic epidemiology with PopPUNK
    Lees, John A.
    Harris, Simon R.
    Tonkin-Hill, Gerry
    Gladstone, Rebecca A.
    Lo, Stephanie W.
    Weiser, Jeffrey N.
    Corander, Jukka
    Bentley, Stephen D.
    Croucher, Nicholas J.
    [J]. GENOME RESEARCH, 2019, 29 (02) : 304 - 316
  • [8] Pathogenesis and Pathophysiology of Pneumococcal Meningitis
    Mook-Kanamori, Barry B.
    Geldhoff, Madelijn
    van der Poll, Tom
    van de Beek, Diederik
    [J]. CLINICAL MICROBIOLOGY REVIEWS, 2011, 24 (03) : 557 - 591
  • [9] Polypolish: Short-read polishing of long-read bacterial genome assemblies
    Wick, Ryan R.
    Holt, Kathryn E.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2022, 18 (01)
  • [10] Wick Ryan R, 2015, Bioinformatics, V31, P3350, DOI 10.1093/bioinformatics/btv383