First cases of SARS-CoV-2 BA.2.86 in Denmark, 2023

被引：43

作者：

Rasmussen, Morten ^{[1
]}

Moller, Frederik Trier ^{[2
]}

Gunalan, Vithiagaran ^{[1
]}

Baig, Sharmin ^{[3
]}

Bennedbaek, Marc ^{[1
]}

Christiansen, Lasse Engbo ^{[4
]}

Cohen, Arieh Sierra ^{[5
]}

Ellegaard, Kirsten ^{[3
]}

Fomsgaard, Anders ^{[1
]}

Franck, Kristina Traeholt ^{[6
]}

Larsen, Nicolai Balle ^{[5
]}

Larsen, Tine Graakjaer ^{[2
]}

Lassauniere, Ria ^{[1
]}

Polacek, Charlotta ^{[1
]}

Qvesel, Amanda Gammelby ^{[6
]}

Sieber, Raphael Niklaus ^{[3
]}

Rasmussen, Lasse Dam ^{[6
]}

Stegger, Marc ^{[3
,7
]}

Spiess, Katja ^{[1
]}

Tang, Man-Hung Eric ^{[3
]}

Vestergaard, Lasse Skafte ^{[2
]}

Andersen, Thomas Emil ^{[8
,9
]}

Hoegh, Silje Vermedal ^{[8
]}

Pedersen, Rune Micha ^{[8
,9
]}

Skov, Marianne Nielsine ^{[8
,9
]}

Steinke, Kat ^{[8
]}

Sydenham, Thomas Vognbjerg ^{[8
,9
]}

Hopp, Morten ^{[10
,11
]}

Nielsen, Lene ^{[10
,11
]}

Krause, Tyra Grove ^{[12
]}

Ullum, Henrik ^{[13
]}

Jokelainen, Pikka ^{[14
]}

机构：

[1] Statens Serum Inst, Virus Res & Dev Lab, Virus & Microbiol Special Diagnost, Copenhagen, Denmark

[2] Statens Serum Inst, Infect Dis Epidemiol & Prevent, Copenhagen, Denmark

[3] Statens Serum Inst, Sequencing & Bioinformat, Bacteria Parasites & Fungi, Copenhagen, Denmark

[4] Statens Serum Inst, Epidemiol Res, Copenhagen, Denmark

[5] TestCenter Denmark, Statens Serum Inst, Copenhagen, Denmark

[6] Statens Serum Inst, Virus Surveillance & Res Lab, Virus & Microbiol Special Diagnost, Copenhagen, Denmark

[7] Murdoch Univ, Harry Butler Inst, Antimicrobial Resistance & Infect Dis Lab, Perth, WA, Australia

[8] Odense Univ Hosp, Dept Clin Microbiol, Odense, Denmark

[9] Univ Southern Denmark, Res Unit Clin Microbiol, Odense, Denmark

[10] Copenhagen Univ Hosp, Dept Clin Microbiol, Herlev, Denmark

[11] Copenhagen Univ Hosp, Dept Clin Microbiol, Gentofte, Denmark

[12] Statens Serum Inst, Epidemiol Infect Dis Preparedness, Copenhagen, Denmark

[13] Statens Serum Inst, Copenhagen, Denmark

[14] Statens Serum Inst, Infect Dis Preparedness, Copenhagen, Denmark

来源：

EUROSURVEILLANCE | 2023年 / 28卷 / 36期

关键词：

D O I：

10.2807/1560-7917.ES.2023.28.36.2300460

中图分类号：

R51 [传染病];

学科分类号：

100401 ;

摘要：

We describe 10 cases of severe acute respiratory syn-drome coronavirus 2 (SARS-CoV-2) variant BA.2.86 detected in Denmark, including molecular character-istics and results from wastewater surveillance that indicate that the variant is circulating in the country at a low level. This new variant with many spike gene mutations was classified as a variant under monitor-ing by the World Health Organization on 17 August 2023. Further global monitoring of COVID-19, BA.2.86 and other SARS-CoV-2 variants is highly warranted.

引用

页数：5

共 13 条

[1] BEAST: Bayesian evolutionary analysis by sampling trees [J].

Drummond, Alexei J. ;

Rambaut, Andrew .

BMC EVOLUTIONARY BIOLOGY, 2007, 7 (1)

[2] A RT-qPCR system using a degenerate probe for specific identification and differentiation of SARS-CoV-2 Omicron (B.1.1.529) variants of concern [J].

Jessen, Randi ;

Nielsen, Line ;

Larsen, Nicolai Balle ;

Cohen, Arieh Sierra ;

Gunalan, Vithiagaran ;

Marving, Ellinor ;

Alfaro-Nunez, Alonzo ;

Polacek, Charlotta ;

Fomsgaard, Anders ;

Spiess, Katja .

PLOS ONE, 2022, 17 (10)

[3]

Kalyaanamoorthy S, 2017, NAT METHODS, V14, P587, DOI [10.1038/NMETH.4285, 10.1038/nmeth.4285]

[4]

Karthikeyan S., 2022, NATURE, DOI DOI 10.1038/s41586-022-05049-6

[5] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[6] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].

Lam-Tung Nguyen ;

Schmidt, Heiko A. ;

von Haeseler, Arndt ;

Bui Quang Minh .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274

[7] Household transmission of SARS-CoV-2 Omicron variant of concern subvariants BA.1 and BA.2 in Denmark [J].

Lyngse, Frederik Plesner ;

Kirkeby, Carsten Thure ;

Denwood, Matthew ;

Christiansen, Lasse Engbo ;

Molbak, Kare ;

Moller, Camilla Holten ;

Skov, Robert Leo ;

Krause, Tyra Grove ;

Rasmussen, Morten ;

Sieber, Raphael Niklaus ;

Johannesen, Thor Bech ;

Lillebaek, Troels ;

Fonager, Jannik ;

Fomsgaard, Anders ;

Moller, Frederik Trier ;

Stegger, Marc ;

Overvad, Maria ;

Spiess, Katja ;

Mortensen, Laust Hvas .

NATURE COMMUNICATIONS, 2022, 13 (01)

[8] Predicting COVID-19 Incidence Using Wastewater Surveillance Data, Denmark, October 2021-June 2022 [J].

McManus, Oliver ;

Christiansen, Lasse Engbo ;

Nauta, Maarten ;

Krogsgaard, Lene Wulff ;

Bahrenscheer, Naja Stolberg ;

von Kappelgaard, Lene ;

Christiansen, Tobias ;

Hansen, Mikkel ;

Hansen, Nicco Claudio ;

Kahler, Jonas ;

Rasmussen, Anders ;

Richter, Stine Raith ;

Rasmussen, Lasse Dam ;

Franck, Kristina Traeholt ;

Ethelberg, Steen .

EMERGING INFECTIOUS DISEASES, 2023, 29 (08) :1589-1597

[9] A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research [J].

Rihn, Suzannah J. ;

Merits, Andres ;

Bakshi, Siddharth ;

Turnbull, Matthew L. ;

Wickenhagen, Arthur ;

Alexander, Akira J. T. ;

Baillie, Carla ;

Brennan, Benjamin ;

Brown, Fiona ;

Brunker, Kirstyn ;

Bryden, Steven R. ;

Burness, Kerry A. ;

Carmichael, Stephen ;

Cole, Sarah J. ;

Cowton, Vanessa M. ;

Davies, Paul ;

Davis, Chris ;

De Lorenzo, Giuditta ;

Donald, Claire L. ;

Dorward, Mark ;

Dunlop, James I. ;

Elliott, Matthew ;

Fares, Mazigh ;

da Silva Filipe, Ana ;

Freitas, Joseph R. ;

Furnon, Wilhelm ;

Gestuveo, Rommel J. ;

Geyer, Anna ;

Giesel, Daniel ;

Goldfarb, Daniel M. ;

Goodman, Nicola ;

Gunson, Rory ;

Hastie, C. James ;

Herder, Vanessa ;

Hughes, Joseph ;

Johnson, Clare ;

Johnson, Natasha ;

Kohl, Alain ;

Kerr, Karen ;

Leech, Hannah ;

Lello, Laura Sandra ;

Li, Kathy ;

Lieber, Gauthier ;

Liu, Xiang ;

Lingala, Rajendra ;

Loney, Colin ;

Mair, Daniel ;

McElwee, Marion J. ;

McFarlane, Steven ;

Nichols, Jenna .

PLOS BIOLOGY, 2021, 19 (02)

[10] Electronic reporting of diagnostic laboratory test results from all healthcare sectors is a cornerstone of national preparedness and control of COVID-19 in Denmark [J].

Schonning, Kristian ;

Dessau, Ram Benny ;

Jensen, Thoger Gorm ;

Thorsen, Nicklas Myrthue ;

Wiuff, Camilla ;

Nielsen, Lene ;

Gubbels, Sophie ;

Denwood, Matt ;

Thygesen, Uffe Hogsbro ;

Christensen, Lasse Engbo ;

Moller, Camilla Holten ;

Moller, Jens Kjolseth ;

Ellermann-Eriksen, Svend ;

ostergaard, Christian ;

Lam, Janni Uyen Hoa ;

Abushalleeh, Nour ;

Meaidi, Marianna ;

Olsen, Stefan ;

Molbak, Kare ;

Voldstedlund, Marianne .

APMIS, 2021, 129 (07) :438-451

← 1 2 →