Whole-genome sequence of Macaca fascicularis: liver tissue

被引:0
|
作者
Seo, Eun-Hye [1 ]
Kim, Jeong-Hwan [2 ]
Kim, Da-Hee [3 ]
Oh, Jung-Hwa [4 ]
Kim, Seon-Young [1 ]
机构
[1] Korea Res Inst Biosci & Biotechnol, Korean Bioinformat Ctr, Daejeon, South Korea
[2] Korea Res Inst Biosci & Biotechnol, Aging Convergence Res Ctr, Daejeon, South Korea
[3] Korea Inst Toxicol, Jeonbuk Branch, Jeonbuk, South Korea
[4] Korea Inst Toxicol, Dept Predict Toxicol, Daejeon, South Korea
来源
BMC GENOMIC DATA | 2023年 / 24卷 / 01期
基金
新加坡国家研究基金会;
关键词
Macaca fascicularis; Cynomolgus monkeys; Whole genome sequencing;
D O I
10.1186/s12863-023-01114-9
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
ObjectivesThrombocytopenia is a condition that causes a low amount of blood platelets. Platelets are blood cells that play an essential role in blood coagulation. Therefore, thrombocytopenia can put the patient at risk for mild to severe bleeding. Thrombocytopenia is caused by a decrease in platelet production in the bone marrow or by a drug or immune system problem when production is normal. In particular, in some ASO-induced thrombocytopenia, the mechanism is not clear. Therefore, whole genome sequencing (WGS) was performed to discover genetic differences that affect thrombocytopenia and individual susceptibility to drugs between normal and reduced platelet monkeys despite administering the same ASO.Data descriptionThree antisense oligonucleotide (ASO) substances were injected into the subcutaneous tissue of monkeys for 12 weeks in two experiments. The monkeys were classified into three groups: monkeys with thrombocytopenia, monkeys without thrombocytopenia, and control monkeys not treated with ASO substances. Whole genome sequencing data was generated using liver tissues of monkeys. These data will be useful for identifying genetic differences that affect thrombocytopenia and drug sensitivity.
引用
收藏
页数:3
相关论文
共 50 条
  • [1] Whole-genome sequence of Macaca fascicularis: liver tissue
    Eun-Hye Seo
    Jeong-Hwan Kim
    Da-Hee Kim
    Jung-Hwa Oh
    Seon-Young Kim
    BMC Genomic Data, 24
  • [2] The whole mitochondrial genome of the Cynomolgus macaque (Macaca fascicularis)
    Li, Ruilei
    Wang, Huawei
    Yang, Liqin
    Zhang, Baoming
    Li, Yijiang
    Hu, Jiansheng
    Kong, Qingpeng
    MITOCHONDRIAL DNA, 2015, 26 (02): : 284 - 286
  • [3] Assembly and annotation of whole-genome sequence of Fusarium equiseti
    Li, Xueping
    Xu, Shiyang
    Zhang, Jungao
    Li, Minquan
    GENOMICS, 2021, 113 (04) : 2870 - 2876
  • [4] Comparison of structural variant callers for massive whole-genome sequence data
    Soobok Joe
    Jong-Lyul Park
    Jun Kim
    Sangok Kim
    Ji-Hwan Park
    Min-Kyung Yeo
    Dongyoon Lee
    Jin Ok Yang
    Seon-Young Kim
    BMC Genomics, 25
  • [5] Comparison of structural variant callers for massive whole-genome sequence data
    Joe, Soobok
    Park, Jong-Lyul
    Kim, Jun
    Kim, Sangok
    Park, Ji-Hwan
    Yeo, Min-Kyung
    Lee, Dongyoon
    Yang, Jin Ok
    Kim, Seon-Young
    BMC GENOMICS, 2024, 25 (01)
  • [6] Defining metrics for whole-genome sequence analysis of MRSA in clinical practice
    Raven, Kathy E.
    Blane, Beth
    Kumar, Narender
    Leek, Danielle
    Bragin, Eugene
    Coll, Francesc
    Parkhill, Julian
    Peacock, Sharon J.
    MICROBIAL GENOMICS, 2020, 6 (04):
  • [7] Whole-genome sequence of Arthrinium phaeospermum, a globally distributed pathogenic fungus
    Li, Shujiang
    Tang, Yaowen
    Fang, Xinmei
    Qiao, Tianmin
    Han, Shan
    Zhu, Tianhui
    GENOMICS, 2020, 112 (01) : 919 - 929
  • [8] Whole-genome sequence of the planarian Dugesia japonica combining Illumina and PacBio data
    Tian, Qingnan
    Guo, Qi
    Guo, Yanan
    Luo, Longhai
    Kristiansen, Karsten
    Han, Zujing
    Fang, Huimin
    Zhang, Shoutao
    GENOMICS, 2022, 114 (02)
  • [9] High Whole-Genome Sequence Diversity of Human Papillomavirus Type 18 Isolates
    van der Weele, Pascal
    Meijer, Chris J. L. M.
    King, Audrey J.
    VIRUSES-BASEL, 2018, 10 (02):
  • [10] Whole-Genome Sequencing of Tibetan Macaque (Macaca thibetana) Provides New Insight into the Macaque Evolutionary History
    Fan, Zhenxin
    Zhao, Guang
    Li, Peng
    Osada, Naoki
    Xing, Jinchuan
    Yi, Yong
    Du, Lianming
    Silva, Pedro
    Wang, Hongxing
    Sakate, Ryuichi
    Zhang, Xiuyue
    Xu, Huailiang
    Yue, Bisong
    Li, Jing
    MOLECULAR BIOLOGY AND EVOLUTION, 2014, 31 (06) : 1475 - 1489