An improved epidemiological-unscented Kalman filter (hybrid SEIHCRDV-UKF) model for the prediction of COVID-19. Application on real-time data

被引:17
作者
Papageorgiou, Vasileios E. [1 ]
Tsaklidis, George [1 ]
机构
[1] Aristotle Univ Thessaloniki, Dept Math, Thessaloniki 54124, Greece
关键词
Epidemiology; COVID-19; Unscented Kalman filter; State-space models; Infectious diseases; Dynamic parameter estimation; VACCINATION; IMPACT; STATE;
D O I
10.1016/j.chaos.2022.112914
中图分类号
O1 [数学];
学科分类号
0701 ; 070101 ;
摘要
The prevalence of COVID-19 has been the most serious health challenge of the 21th century to date, concerning national health systems on a daily basis, since December 2019 when it appeared in Wuhan City. Nevertheless, most of the proposed mathematical methodologies aiming to describe the dynamics of an epidemic, rely on deterministic models that are not able to reflect the true nature of its spread. In this paper, we propose a SEIHCRDV model - an extension/improvement of the classic SIR compartmental model - which also takes into consideration the populations of exposed, hospitalized, admitted in intensive care units (ICU), deceased and vaccinated cases, in combination with an unscented Kalman filter (UKF), providing a dynamic estimation of the time dependent system's parameters. The stochastic approach is considered necessary, as both observations and system equations are characterized by uncertainties. Apparently, this new consideration is useful for examining various pandemics more effectively. The reliability of the model is examined on the daily recordings of COVID-19 in France, over a long period of 265 days. Two major waves of infection are observed, starting in January 2021, which signified the start of vaccinations in Europe providing quite encouraging predictive performance, based on the produced NRMSE values. Special emphasis is placed on proving the non-negativity of SEIHCRDV model, achieving a representative basic reproductive number R0 and demonstrating the existence and stability of disease equilibria according to the formula produced to estimate R0. The model outperforms in predictive ability not only deterministic approaches but also state-of-the-art stochastic models that employ Kalman filters. Further-more, the relevant analysis supports the importance of vaccination, as even a small increase in the dialy vaccination rate could lead to a notable reduction in mortality and hospitalizations.
引用
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页数:20
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共 54 条
[1]   Tracking R of COVID-19: A new real-time estimation using the Kalman filter [J].
Arroyo-Marioli, Francisco ;
Bullano, Francisco ;
Kucinskas, Simas ;
Rondon-Moreno, Carlos .
PLOS ONE, 2021, 16 (01)
[2]   Is the lockdown important to prevent the COVID-19 pandemic? Effects on psychology, environment and economy-perspective [J].
Atalan, Abdulkadir .
ANNALS OF MEDICINE AND SURGERY, 2020, 56 :38-42
[3]  
Brauer F, 2019, TEXTS APPL MATH, V69, P63, DOI 10.1007/978-1-4939-9828-9_3
[4]   Bayesian particle filter algorithm for learning epidemic dynamics [J].
Calvetti, D. ;
Hoover, A. ;
Rose, J. ;
Somersalo, E. .
INVERSE PROBLEMS, 2021, 37 (11)
[5]   A SIR model assumption for the spread of COVID-19 in different communities [J].
Cooper, Ian ;
Mondal, Argha ;
Antonopoulos, Chris G. .
CHAOS SOLITONS & FRACTALS, 2020, 139
[6]  
Coronavirus Research Center of John Hopkins University, 2021, US
[7]   Models, prediction, and estimation of outbreaks of infectious disease [J].
Costa, PJ ;
Dunyak, JP ;
Mohtashemi, M .
PROCEEDINGS OF THE IEEE SOUTHEASTCON 2004: EXCELLENCE IN ENGINEERING, SCIENCE, AND TECHNOLOGY, 2005, :174-178
[8]   Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England [J].
Davies, Nicholas G. ;
Abbott, Sam ;
Barnard, Rosanna C. ;
Jarvis, Christopher, I ;
Kucharski, Adam J. ;
Munday, James D. ;
Pearson, Carl A. B. ;
Russell, Timothy W. ;
Tully, Damien C. ;
Washburne, Alex D. ;
Wenseleers, Tom ;
Gimma, Amy ;
Waites, William ;
Wong, Kerry L. M. ;
van Zandvoort, Kevin ;
Silverman, Justin D. ;
Diaz-Ordaz, Karla ;
Keogh, Ruth ;
Eggo, Rosalind M. ;
Funk, Sebastian ;
Jit, Mark ;
Atkins, Katherine E. ;
Edmunds, W. John .
SCIENCE, 2021, 372 (6538) :149-+
[9]   Timing and causes of death in severe COVID-19 patients [J].
de Roquetaillade, Charles ;
Bredin, Swann ;
Lascarrou, Jean-Baptiste ;
Soumagne, Thibaud ;
Cojocaru, Mariana ;
Chousterman, Benjamin Glenn ;
Leclerc, Maxime ;
Gouhier, Albin ;
Piton, Gael ;
Pene, Frederic ;
Stoclin, Annabelle ;
Llitjos, Jean-Francois .
CRITICAL CARE, 2021, 25 (01)
[10]   The benefits of large scale covid-19 vaccination [J].
Dye, Christopher .
BMJ-BRITISH MEDICAL JOURNAL, 2022, 377