How to identify and quantify the members of the Bacillus genus?

被引:7
作者
Xu, Xinming [1 ,2 ]
Kovacs, Akos T. [3 ]
机构
[1] Leiden Univ, Inst Biol Leiden, Leiden, Netherlands
[2] Tech Univ Denmark, Bacterial Interact & Evolut Grp, DTU Bioengn, Lyngby, Denmark
[3] Leiden Univ, Inst Biol Leiden, NL-2333 BE Leiden, Netherlands
关键词
16S RIBOSOMAL-RNA; LATER HETEROTYPIC SYNONYM; PHYLOGENOMIC ANALYSIS SHOWS; SEQUENCE-ANALYSIS; SP-NOV; THURINGIENSIS SEROVARS; PROPIDIUM MONOAZIDE; SUBTILIS STRAINS; FLOW-CYTOMETRY; CEREUS CLADES;
D O I
10.1111/1462-2920.16593
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Members of the Bacillus genus are widely distributed throughout natural environments and have been studied for decades among others for their physiology, genetics, ecological functions, and applications. However, despite its prevalence in nature, the characterization and classification of Bacillus remain challenging due to its complex and ever-evolving taxonomic framework. This review addresses the current state of the Bacillus taxonomic landscape and summarizes the critical points in the development of Bacillus phylogeny. With a clear view of Bacillus phylogeny as a foundation, we subsequently review the methodologies applied in identifying and quantifying Bacillus, while also discussing their respective advantages and disadvantages.
引用
收藏
页数:13
相关论文
共 132 条
[1]   Recovery and quantification of bacterial cells associated with streambed sediments [J].
Amalfitano, Stefano ;
Fazi, Stefano .
JOURNAL OF MICROBIOLOGICAL METHODS, 2008, 75 (02) :237-243
[2]  
[Anonymous], 1876, Cohns Beitrge zur Biologie der Pflanzen
[3]   You Can'tB. cereus- A Review ofBacillus cereusStrains That Cause Anthrax-Like Disease [J].
Baldwin, Victoria M. .
FRONTIERS IN MICROBIOLOGY, 2020, 11
[4]   Use of 16S rRNA, 23S rRNA, and gyrB gene sequence analysis to determine phylogenetic relationships of Bacillus cereus group microorganisms [J].
Bavykin, SG ;
Lysov, YP ;
Zakhariev, V ;
Kelly, JJ ;
Jackman, J ;
Stahl, DA ;
Cherni, A .
JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (08) :3711-3730
[5]  
Berkeley R.C. W., 2002, Applications and systematics of bacillus and relatives
[6]   Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus [J].
Bhandari, Vaibhav ;
Ahmod, Nadia Z. ;
Shah, Haroun N. ;
Gupta, Radhey S. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :2712-2726
[7]  
Borriss R, 2011, BACTERIA IN AGROBIOLOGY: PLANT GROWTH RESPONSES, P41, DOI 10.1007/978-3-642-20332-9_3
[8]   Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome [J].
Boshier, Florencia A. Tettamanti ;
Srinivasan, Sujatha ;
Lopez, Anthony ;
Hoffman, Noah G. ;
Proll, Sean ;
Fredricks, David N. ;
Schiffer, Joshua T. .
MSYSTEMS, 2020, 5 (02)
[9]   The status of the species Bacillus aerophilus and Bacillus stratosphericus. Request for an Opinion [J].
Branquinho, Raquel ;
Klein, Guenter ;
Kaempfer, Peter ;
Peixe, Luisa V. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :1101-1101
[10]   Recent advances in downstream processing and formulations of Bacillus thuringiensis based biopesticides [J].
Brar, SK ;
Verma, M ;
Tyaci, RD ;
Valéro, JR .
PROCESS BIOCHEMISTRY, 2006, 41 (02) :323-342