Dynamic Covalent Bonds in the Ebselen Class of Antioxidants Probed by X-ray Quantum Crystallography

被引:3
作者
Singh, Ashi [1 ]
Avinash, Kiran [1 ]
Malaspina, Lorraine A. [2 ]
Banoo, Masoumeh [1 ]
Alhameedi, Khidhir [3 ,4 ]
Jayatilaka, Dylan [3 ]
Grabowsky, Simon [2 ]
Thomas, Sajesh P. [1 ]
机构
[1] Indian Inst Technol Delhi, Dept Chem, New Delhi 110016, India
[2] Univ Bern, Dept Chem Biochem & Pharmaceut Sci, Freiestr 3, CH-3012 Bern, Switzerland
[3] Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia
[4] Univ Kerbala, Fac Educ Pure Sci, Karbala, Iraq
关键词
Organic selenium; Dynamic covalent bond; Quantum crystallography; X-ray wavefunction; Bonding analysis; WAVE-FUNCTION; ELECTRON-DENSITY; SE-N; CRYSTALS; REPRODUCIBILITY; DIFFRACTION; REFINEMENT; CHEMISTRY; NETWORKS; INSIGHTS;
D O I
10.1002/chem.202303384
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Dynamic bonds are essential structural ingredients of dynamic covalent chemistry that involve reversible cleavage and formation of bonds. Herein, we explore the electronic characteristics of Se-N bonds in the organo-selenium antioxidant ebselen and its derivatives for their propensity to function as dynamic covalent bonds by employing high-resolution X-ray quantum crystallography and complementary computational studies. An analysis of the experimentally reconstructed X-ray wavefunctions reveals the salient electronic features of the Se-N bonds with very low electron density localized at the bonding region and a positive Laplacian value at the bond critical point. Bond orders and percentage covalency and ionicity estimated from the X-ray wavefunctions, along with localized orbital locator (LOL) and electron localization function (ELF) analyses show that the Se-N bond is unique in its closed shell-like features, despite being a covalent bond. Time-dependent DFT calculations simulate the cleavage of Se-N bonds in ebselen in the excited state, further substantiating their nature as dynamic bonds. X-ray wavefunctions reveal that the nature of Se-N bonds in ebselen class of antioxidants is akin to dynamic bonds, with electronic features intermediary to covalent and ionic bonds.+image
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页数:10
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