Omics-based approaches for the systematic profiling of mitochondrial biology

被引:11
作者
Schaefer, Jasmin Adriana [1 ]
Sutandy, F. X. Reymond [1 ]
Muench, Christian [1 ]
机构
[1] Goethe Univ Frankfurt, Inst Biochem 2, Theodor Stern Kai 7,Haus 75, D-60590 Frankfurt, Germany
基金
欧洲研究理事会;
关键词
MASS-SPECTROMETRY; COMPLEX I; ASSEMBLY FACTOR; PROTEIN; CELLS; MOUSE; REVEALS; QUANTIFICATION; IDENTIFICATION; INTEGRATION;
D O I
10.1016/j.molcel.2023.02.015
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Mitochondria are essential for cellular functions such as metabolism and apoptosis. They dynamically adapt to the changing environmental demands by adjusting their protein, nucleic acid, metabolite, and lipid con-tents. In addition, the mitochondrial components are modulated on different levels in response to changes, including abundance, activity, and interaction. A wide range of omics-based approaches has been devel-oped to be able to explore mitochondrial adaptation and how mitochondrial function is compromised in dis-ease contexts. Here, we provide an overview of the omics methods that allow us to systematically investigate the different aspects of mitochondrial biology. In addition, we show examples of how these methods have provided new biological insights. The emerging use of these toolboxes provides a more comprehensive un-derstanding of the processes underlying mitochondrial function.
引用
收藏
页码:911 / 926
页数:16
相关论文
共 171 条
[1]   Metabolomics: A Scoping Review of Its Role as a Tool for Disease Biomarker Discovery in Selected Non-Communicable Diseases [J].
Aderemi, Adewale Victor ;
Ayeleso, Ademola Olabode ;
Oyedapo, Oluboade Oluokun ;
Mukwevho, Emmanuel .
METABOLITES, 2021, 11 (07)
[2]   Real-Time NMR Spectroscopy for Studying Metabolism [J].
Alshamleh, Islam ;
Krause, Nina ;
Richter, Christian ;
Kurrle, Nina ;
Serve, Hubert ;
Guenther, Ulrich L. ;
Schwalbe, Harald .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2020, 59 (06) :2304-2308
[3]   The genetics of mitochondrial disease: dissecting mitochondrial pathology using multi-omic pipelines [J].
Alston, Charlotte L. ;
Stenton, Sarah L. ;
Hudson, Gavin ;
Prokisch, Holger ;
Taylor, Robert W. .
JOURNAL OF PATHOLOGY, 2021, 254 (04) :430-442
[4]   Biallelic Mutations in TMEM126B Cause Severe Complex I Deficiency with a Variable Clinical Phenotype [J].
Alston, Charlotte L. ;
Compton, Alison G. ;
Formosa, Luke E. ;
Strecker, Valentina ;
Olahova, Monika ;
Haack, Tobias B. ;
Smet, Joel ;
Stouffs, Katrien ;
Diakumis, Peter ;
Ciara, Elzbieta ;
Cassiman, David ;
Romain, Nadine ;
Yarham, John W. ;
He, Langping ;
De Paepe, Boel ;
Vanlander, Arnaud V. ;
Seneca, Sara ;
Feichtinger, Rene G. ;
Poski, Rafal ;
Rokicki, Dariusz ;
Pronicka, Ewa ;
Haller, Ronald G. ;
Van Hove, Johan L. K. ;
Bahlo, Melanie ;
Mayr, Johannes A. ;
Van Coster, Rudy ;
Prokisch, Holger ;
Wittig, Ilka ;
Ryan, Michael T. ;
Thorburn, David R. ;
Taylor, Robert W. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2016, 99 (01) :217-227
[5]   A systematic review of post-translational modifications in the mitochondrial permeability transition pore complex associated with cardiac diseases [J].
Alves-Figueiredo, H. ;
Silva-Platas, C. ;
Lozano, O. ;
Vazquez-Garza, E. ;
Guerrero-Beltran, C. E. ;
Zarain-Herzberg, A. ;
Garcia-Rivas, G. .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, 2021, 1867 (01)
[6]   A High-Density Human Mitochondrial Proximity Interaction Network [J].
Antonicka, Hana ;
Lin, Zhen-Yuan ;
Janer, Alexandre ;
Aaltonen, Mari J. ;
Weraarpachai, Woranontee ;
Gingras, Anne-Claude ;
Shoubridge, Eric A. .
CELL METABOLISM, 2020, 32 (03) :479-+
[7]   Computational principles and challenges in single-cell data integration [J].
Argelaguet, Ricard ;
Cuomo, Anna S. E. ;
Stegle, Oliver ;
Marioni, John C. .
NATURE BIOTECHNOLOGY, 2021, 39 (10) :1202-1215
[8]  
Ariosa-Morejon Y, 2021, ELIFE, V10, DOI [10.7554/eLife.66635, 10.7554/eLife.66635.sa1, 10.7554/eLife.66635.sa2]
[9]   Genome-wide identification and quantification of protein synthesis in cultured cells and whole tissues by puromycin-associated nascent chain proteomics (PUNCH-P) [J].
Aviner, Ranen ;
Geiger, Tamar ;
Elroy-Stein, Orna .
NATURE PROTOCOLS, 2014, 9 (04) :751-760
[10]   Mechanisms and Dynamics of Protein Acetylation in Mitochondria [J].
Baeza, Josue ;
Smallegan, Michael J. ;
Denu, John M. .
TRENDS IN BIOCHEMICAL SCIENCES, 2016, 41 (03) :231-244