Deep Learning Body Region Classification of MRI and CT Examinations

被引:5
作者
Raffy, Philippe [1 ,2 ]
Pambrun, Jean-Francois [2 ]
Kumar, Ashish [2 ,3 ]
Dubois, David [2 ]
Patti, Jay Waldron [4 ]
Cairns, Robyn Alexandra [5 ]
Young, Ryan [2 ,6 ]
机构
[1] Clairity, Austin, TX USA
[2] Enterprise Imaging Solut, Change Healthcare, 10711 Cambie Rd, Richmond, BC V6X 3G5, Canada
[3] Accenture, San Francisco, CA USA
[4] Mecklenburg Radiol Associates, Charlotte, NC USA
[5] Univ British Columbia, Vancouver, BC, Canada
[6] Allen Inst, Seattle, WA USA
关键词
Anatomy; Classification; Deep learning; Machine learning; Medical imaging; CT; MRI;
D O I
10.1007/s10278-022-00767-9
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
This study demonstrates the high performance of deep learning in identification of body regions covering the entire human body from magnetic resonance (MR) and computed tomography (CT) axial images across diverse acquisition protocols and modality manufacturers. Pixel-based analysis of anatomy contained in image sets can provide accurate anatomic labeling. For this purpose, a convolutional neural network (CNN)-based classifier was developed to identify body regions in CT and MRI studies. Seventeen CT (18 MRI) body regions covering the entire human body were defined for the classification task. Three retrospective datasets were built for the AI model training, validation, and testing, with a balanced distribution of studies per body region. The test datasets originated from a different healthcare network than the train and validation datasets. Sensitivity and specificity of the classifier was evaluated for patient age, patient sex, institution, scanner manufacturer, contrast, slice thickness, MRI sequence, and CT kernel. The data included a retrospective cohort of 2891 anonymized CT cases (training, 1804 studies; validation, 602 studies; test, 485 studies) and 3339 anonymized MRI cases (training, 1911 studies; validation, 636 studies; test, 792 studies). Twenty-seven institutions from primary care hospitals, community hospitals, and imaging centers contributed to the test datasets. The data included cases of all sexes in equal proportions and subjects aged from 18 years old to + 90 years old. Image-level weighted sensitivity of 92.5% (92.1-92.8) for CT and 92.3% (92.0-92.5) for MRI and weighted specificity of 99.4% (99.4-99.5) for CT and 99.2% (99.1-99.2) for MRI were achieved. Deep learning models can classify CT and MR images by body region including lower and upper extremities with high accuracy.
引用
收藏
页码:1291 / 1301
页数:11
相关论文
共 17 条
[1]   A survey on active learning and human-in-the-loop deep learning for medical image analysis [J].
Budd, Samuel ;
Robinson, Emma C. ;
Kainz, Bernhard .
MEDICAL IMAGE ANALYSIS, 2021, 71
[2]   1977 RIETZ LECTURE - BOOTSTRAP METHODS - ANOTHER LOOK AT THE JACKKNIFE [J].
EFRON, B .
ANNALS OF STATISTICS, 1979, 7 (01) :1-26
[3]   Automating Import and Reconciliation of Outside Examinations Submitted to an Academic Radiology Department [J].
Elahi, Ameena ;
Reid, Donovan ;
Redfern, Regina O. ;
Kahn, Charles E., Jr. ;
Cook, Tessa S. .
JOURNAL OF DIGITAL IMAGING, 2020, 33 (02) :355-360
[4]   Deep Residual Learning for Image Recognition [J].
He, Kaiming ;
Zhang, Xiangyu ;
Ren, Shaoqing ;
Sun, Jian .
2016 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2016, :770-778
[5]   LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction [J].
Leuschner, Johannes ;
Schmidt, Maximilian ;
Baguer, Daniel Otero ;
Maass, Peter .
SCIENTIFIC DATA, 2021, 8 (01)
[6]   Peer Review in Diagnostic Radiology: Current State and a Vision for the Future [J].
Mahgerefteh, Shmuel ;
Kruskal, Jonathan B. ;
Yam, Chun S. ;
Blachar, Arye ;
Sosna, Jacob .
RADIOGRAPHICS, 2009, 29 (05) :1221-U21
[7]  
Roth HR, 2015, I S BIOMED IMAGING, P101, DOI 10.1109/ISBI.2015.7163826
[8]   Trends in Use of Medical Imaging in US Health Care Systems and in Ontario, Canada, 2000-2016 [J].
Smith-Bindman, Rebecca ;
Kwan, Marilyn L. ;
Marlow, Emily C. ;
Theis, Mary Kay ;
Bolch, Wesley ;
Cheng, Stephanie Y. ;
Bowles, Erin J. A. ;
Duncan, James R. ;
Greenlee, Robert T. ;
Kushi, Lawrence H. ;
Pole, Jason D. ;
Rahm, Alanna K. ;
Stout, Natasha K. ;
Weinmann, Sheila ;
Miglioretti, Diana L. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2019, 322 (09) :843-856
[9]   Classification of Computed Tomography Images in Different Slice Positions Using Deep Learning [J].
Sugimori, Hiroyuki .
JOURNAL OF HEALTHCARE ENGINEERING, 2018, 2018
[10]  
TCIA, SUBM DEID OV