Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean

被引:1
作者
Halder, Urmi [1 ]
Biswas, Raju [1 ]
Shaw, Rajdeep [1 ]
Chitikineni, Annapurna [2 ,3 ]
Varshney, Rajeev K. [2 ,3 ]
Bandopadhyay, Rajib [1 ]
机构
[1] Univ Burdwan, Dept Bot, Microbiol Sect, Burdwan 713104, West Bengal, India
[2] Int Crops Res Inst Semi Arid Trop, Ctr Excellence Genom & Syst Biol, Hyderabad, India
[3] Murdoch Univ, Ctr Crop & Food Innovat, State Agr Biotechnol Ctr, Murdoch, WA 6500, Australia
关键词
Adaptation; Deep-sea Bacillus; UV resistance; UvrABC; Southern Ocean; EXTRACELLULAR POLYMERIC SUBSTANCES; SP-NOV; MICROBIAL DIVERSITY; EMENDED DESCRIPTION; HYDROTHERMAL VENT; ESCHERICHIA-COLI; POLAR VORTEX; UV; SEDIMENTS; PROTEINS;
D O I
10.1007/s00300-023-03212-x
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Life under deep-sea undergoes unusual adaption, especially with darkness, increased pressure, cold, and recalcitrant carbon. Microbes in the deep sea usually evolved through selection and are likely to increase little important natural ability like motility, surface adhesion, and membrane with polyunsaturated fatty acids. Sporulation within the genus Bacillus may perhaps play an important role for survival in the deep-sea biosphere. Bacillus altitudinis SORB11 was isolated from the dark and cold deep-sea environment of the Southern Ocean. Violet radiation and starvation were primarily investigated and characterized; the bacterial strain is a motile, free-living, bathypelagic, psychrotolerant. Genome of the strain B. altitudinis SORB11 consisting of 3.6 Mb circular chromosome with an average 41.2% GC predictably included Brevibacillus phage genome. The genome harbored a considerable number of foreign genetic materials that would likely to be acquired by the lateral gene transfer. Moreover, the energy metabolic pathway associated genes, potentially involved in methane, sulfur, and nitrogen metabolisms, are essentially present in the genome. Cells of the strain were capable to withstand more than 1800 Jcm(-2) exposure of UV-B radiation, consequently, the exposed cells were characterized by having thick cell-wall and reduced cell shape and size. UvrA and UvrB proteins from UvrABC repair system were over-expressed in the treated cells. So, detailed investigations on such adaptations might help to understand the origin and evolution of extremophilic organisms. [GRAPHICS] .
引用
收藏
页码:115 / 133
页数:19
相关论文
共 105 条
[1]  
Acinas SG, 2019, BIORXIV, V13
[2]   The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation [J].
Allen, Michelle A. ;
Lauro, Federico M. ;
Williams, Timothy J. ;
Burg, Dominic ;
Siddiqui, Khawar S. ;
De Francisci, Davide ;
Chong, Kevin W. Y. ;
Pilak, Oliver ;
Chew, Hwee H. ;
De Maere, Matthew Z. ;
Ting, Lily ;
Katrib, Marilyn ;
Ng, Charmaine ;
Sowers, Kevin R. ;
Galperin, Michael Y. ;
Anderson, Iain J. ;
Ivanova, Natalia ;
Dalin, Eileen ;
Martinez, Michele ;
Lapidus, Alla ;
Hauser, Loren ;
Land, Miriam ;
Thomas, Torsten ;
Cavicchioli, Ricardo .
ISME JOURNAL, 2009, 3 (09) :1012-1035
[3]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[4]   PHASTER: a better, faster version of the PHAST phage search tool [J].
Arndt, David ;
Grant, Jason R. ;
Marcu, Ana ;
Sajed, Tanvir ;
Pon, Allison ;
Liang, Yongjie ;
Wishart, David S. .
NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) :W16-W21
[5]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[6]   Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress [J].
Babele, Piyoosh K. ;
Singh, Garvita ;
Kumar, Ashok ;
Tyagi, Madhu B. .
FRONTIERS IN MICROBIOLOGY, 2015, 6
[7]   Bacillus alveayuensis sp nov., a thermophilic bacterium isolated from deep-sea sediments of the Ayu Trough [J].
Bae, SS ;
Lee, JH ;
Kim, SJ .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2005, 55 :1211-1215
[8]   Microbial genomic island discovery, visualization and analysis [J].
Bertelli, Claire ;
Tilley, Keith E. ;
Brinkman, Fiona S. L. .
BRIEFINGS IN BIOINFORMATICS, 2019, 20 (05) :1685-1698
[9]   IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets [J].
Bertelli, Claire ;
Laird, Matthew R. ;
Williams, Kelly P. ;
Lau, Britney Y. ;
Hoad, Gemma ;
Winsor, Geoffrey L. ;
Brinkman, Fiona S. L. .
NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) :W30-W35
[10]  
Biemer J J, 1973, Ann Clin Lab Sci, V3, P135