Machine learning-based approach for efficient prediction of diagnosis, prognosis and lymph node metastasis of papillary thyroid carcinoma using adhesion signature selection

被引:0
作者
Sun, Shuo [1 ]
Cai, Xiaoni [2 ]
Shao, Jinhai [2 ]
Zhang, Guimei [3 ,4 ]
Liu, Shan [5 ]
Wang, Hongsheng [1 ]
机构
[1] Beihua Univ, Affiliated Hosp, Dept Hepatobiliary & Pancreat Surg, Jilin 132013, Peoples R China
[2] Zhejiang Univ, Affiliated Hosp 2, Shangyu Peoples Hosp Shaoxing, Dept Gen Surg,Med Coll Hosp, Changchun 312399, Peoples R China
[3] Jilin Univ, First Hosp Jilin Univ, Dept Neurol, Changchun 130061, Peoples R China
[4] First Hosp Jilin Univ, Jilin Univ, Neurosci Ctr, Changchun 130061, Peoples R China
[5] Jilin Univ, Second Hosp Jilin Univ, Dept Nucl Med, Changchun 130041, Peoples R China
关键词
adhesion; bioinformatics; immune cell infiltration; machine learning; papillary thyroid carcinoma; CANCER; RELN; MODELS; GROWTH;
D O I
10.3934/mbe.2023911
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The association between adhesion function and papillary thyroid carcinoma (PTC) is increasingly recognized; however, the precise role of adhesion function in the pathogenesis and prognosis of PTC remains unclear. In this study, we employed the robust rank aggregation algorithm to identify 64 stable adhesion-related differentially expressed genes (ARDGs). Subsequently, using univariate Cox regression analysis, we identified 16 prognostic ARDGs. To construct PTC survival risk scoring models, we employed Lasso Cox and multivariate + stepwise Cox regression methods. Comparative analysis of these models revealed that the Lasso Cox regression model (LPSRSM) displayed superior performance. Further analyses identified age and LPSRSM as independent prognostic factors for PTC. Notably, patients classified as low-risk by LPSRSM exhibited significantly better prognosis, as demonstrated by Kaplan-Meier survival analyses. Additionally, we investigated the potential impact of adhesion feature on energy metabolism and inflammatory responses. Furthermore, leveraging the CMAP database, we screened 10 drugs that may improve prognosis. Finally, using Lasso regression analysis, we identified four genes for a diagnostic model of lymph node metastasis and three genes for a diagnostic model of tumor. These gene models hold promise for prognosis and disease diagnosis in PTC.
引用
收藏
页码:20599 / 20623
页数:25
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