Mineral separation processes operate on properties of individual particle, which can currently be quantified with 2D characterization techniques, namely 2D automated mineralogy. While 2D automated mineralogy data have driven significant developments in particle-based separation models, this data inherently correspond to 2D slices of 3D objects, which leads to stereological bias in the quantification of geometric particle properties. X-ray micro-computed tomography (& mu;CT) is a 3D imaging technique that can quantify particle geometry. However, & mu;CT only collects limited information regarding material composition, making mineral identification quantification a challenge. To overcome this challenge, we present a workflow that utilizes individual particle histograms and corrects image artefacts caused by & mu;CT measurements, such as partial volume effect. We demonstrate the application of the workflow to perform 3D mineral characterisation of a sulfidic gold ore, where mineral phases that are commonly mistaken with & mu;CT could be distinguished: pyrite and chalcopyrite, gold, and galena. Results were verified by comparison with inductively coupled plasma mass spectrometry and 2D automated mineralogy. As a result, the workflow provides the user with a detailed 3D particle dataset containing the modal mineralogy and surface compositions, size, and geometrical properties of each particle in a sample - essential data for modelling mineral separation processes.