Computational Models That Use a Quantitative Structure-Activity Relationship Approach Based on Deep Learning

被引:4
作者
Matsuzaka, Yasunari [1 ,2 ]
Uesawa, Yoshihiro [1 ]
机构
[1] Meiji Pharmaceut Univ, Dept Med Mol Informat, Kiyose 2048588, Japan
[2] Univ Tokyo, Inst Med Sci, Ctr Gene & Cell Therapy, Div Mol & Med Genet, Minato Ku, Tokyo 1088639, Japan
关键词
bioinformatics; convolution neural network; computational models; deep learning; graph convolutional networks; parameter optimization; quantitative structure-activity relationship; CONVOLUTIONAL NEURAL-NETWORK; ACUTE TOXICITY; QSAR MODELS; PREDICTION; PERFORMANCE; TOXICOLOGY; PATHWAYS;
D O I
10.3390/pr11041296
中图分类号
TQ [化学工业];
学科分类号
0817 ;
摘要
In the toxicological testing of new small-molecule compounds, it is desirable to establish in silico test methods to predict toxicity instead of relying on animal testing. Since quantitative structure-activity relationships (QSARs) can predict the biological activity from structural information for small-molecule compounds, QSAR applications for in silico toxicity prediction have been studied for a long time. However, in recent years, the remarkable predictive performance of deep learning has attracted attention for practical applications. In this review, we summarize the application of deep learning to QSAR for constructing prediction models, including a discussion of parameter optimization for deep learning.
引用
收藏
页数:25
相关论文
共 108 条
[1]   Hand Gesture Recognition Using an IR-UWB Radar with an Inception Module-Based Classifier [J].
Ahmed, Shahzad ;
Cho, Sung Ho .
SENSORS, 2020, 20 (02)
[2]   Detecting Buildings and Nonbuildings from Satellite Images Using U-Net [J].
Alsabhan, Waleed ;
Alotaiby, Turky ;
Dudin, Basil .
COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE, 2022, 2022
[3]   RETRACTED: Development of Integrated Neural Network Model for Identification of Fake Reviews in E-Commerce Using Multidomain Datasets (Retracted article. See vol. 2023, 2023) [J].
Alsubari, Saleh Nagi ;
Deshmukh, Sachin N. ;
Al-Adhaileh, Mosleh Hmoud ;
Alsaade, Fawaz Waselalla ;
Aldhyani, Theyazn H. H. .
APPLIED BIONICS AND BIOMECHANICS, 2021, 2021
[4]   Using Toxicological Evidence from QSAR Models in Practice [J].
Benfenati, Emilio ;
Pardoe, Simon ;
Martin, Todd ;
Diaza, Rodolfo Gonella ;
Lombardo, Anna ;
Manganaro, Alberto ;
Gissi, Andrea .
ALTEX-ALTERNATIVES TO ANIMAL EXPERIMENTATION, 2013, 30 (01) :19-40
[5]  
Borrel A., 2020, NUCLEIC ACIDS RES, V48, pW586, DOI [10.1093/nar/gkaa378, DOI 10.1093/NAR/GKAA378]
[6]  
Bruna J., 2015, arXiv, DOI DOI 10.48550/ARXIV.1511.05666
[7]   Vision-Based Detection and Classification of Used Electronic Parts [J].
Chand, Praneel ;
Lal, Sunil .
SENSORS, 2022, 22 (23)
[8]   Acute Toxicity-Supported Chronic Toxicity Prediction: A k-Nearest Neighbor Coupled Read-Across Strategy [J].
Chavan, Swapnil ;
Friedman, Ran ;
Nicholls, Ian A. .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 16 (05) :11659-11677
[9]   LAP: Latency-aware automated pruning with dynamic-based filter selection [J].
Chen, Zailong ;
Liu, Chubo ;
Yang, Wangdong ;
Li, Kenli ;
Li, Keqin .
NEURAL NETWORKS, 2022, 152 :407-418
[10]   Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity [J].
Chipofya, Mapopa ;
Tayara, Hilal ;
Chong, Kil To .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (09)