Integration of parallel metabolomics and transcriptomics reveals metabolic patterns in porcine oocytes during maturation

被引:10
作者
Gao, Ming [1 ]
Chen, Minjian [2 ]
Chen, Qiuzhen [3 ]
Zhu, Shuai [3 ]
Wang, Hengjie [3 ]
Yang, Weizheng [3 ]
Wang, Xi [3 ]
Wang, Qiang [3 ]
Gu, Ling [1 ]
机构
[1] Nanjing Agr Univ, Coll Anim Sci & Technol, Nanjing, Peoples R China
[2] Nanjing Med Univ, Sch Publ Hlth, Key Lab Modern Toxicol, Minist Educ, Nanjing, Peoples R China
[3] Nanjing Med Univ, Suzhou Municipal Hosp, State Key Lab Reprod Med, Nanjing, Peoples R China
来源
FRONTIERS IN ENDOCRINOLOGY | 2023年 / 14卷
基金
中国国家自然科学基金;
关键词
oocyte; energy metabolism; metabolomics; transcriptomics; reproduction; CARBON METABOLISM; EMBRYO; NUTRITION; PROLINE; ENZYMES;
D O I
10.3389/fendo.2023.1131256
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Well-controlled metabolism is the prerequisite for optimal oocyte development. To date, numerous studies have focused mainly on the utilization of exogenous substrates by oocytes, whereas the underlying mechanism of intrinsic regulation during meiotic maturation is less characterized. Herein, we performed an integrated analysis of parallel metabolomics and transcriptomics by isolating porcine oocytes at three time points, cooperatively depicting the global picture of the metabolic patterns during maturation. In particular, we identified the novel metabolic features during porcine oocyte meiosis, such as the fall in bile acids, the active one-carbon metabolism and a progressive decline in nucleotide metabolism. Collectively, the current study not only provides a comprehensive multiple omics data resource, but also may facilitate the discovery of molecular biomarkers that could be used to predict and improve oocyte quality.
引用
收藏
页数:15
相关论文
共 53 条
[1]   HTSeq-a Python']Python framework to work with high-throughput sequencing data [J].
Anders, Simon ;
Pyl, Paul Theodor ;
Huber, Wolfgang .
BIOINFORMATICS, 2015, 31 (02) :166-169
[2]   Nutrition and epigenetics: an interplay of dietary methyl donors, one-carbon metabolism and DNA methylation [J].
Anderson, Olivia S. ;
Sant, Karilyn E. ;
Dolinoy, Dana C. .
JOURNAL OF NUTRITIONAL BIOCHEMISTRY, 2012, 23 (08) :853-859
[3]   DNA methylation in metabolic disorders [J].
Barres, Romain ;
Zierath, Juleen R. .
AMERICAN JOURNAL OF CLINICAL NUTRITION, 2011, 93 (04) :897S-900S
[4]   Metabolic disorder of amino acids, fatty acids and purines reflects the decreases in oocyte quality and potential in sows [J].
Chen, Meixia ;
Zhang, Bo ;
Cai, Shuang ;
Zeng, Xiangfang ;
Ye, Qianhong ;
Mao, Xiangbing ;
Zhang, Shihai ;
Zeng, Xiangzhou ;
Ye, Changchuan ;
Qiao, Shiyan .
JOURNAL OF PROTEOMICS, 2019, 200 :134-143
[5]   Evolving concepts in NAD+ metabolism [J].
Chini, Claudia C. S. ;
Zeidler, Julianna D. ;
Kashyap, Sonu ;
Warner, Gina ;
Chini, Eduardo Nunes .
CELL METABOLISM, 2021, 33 (06) :1076-1087
[6]   STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21
[7]   Simplified cryopreservation of porcine cloned blastocysts [J].
Du, Y. ;
Zhang, Y. ;
Li, J. ;
Kragh, P. M. ;
Kuwayama, M. ;
Ieda, S. ;
Zhang, X. ;
Schmidt, M. ;
Bogh, I. B. ;
Purup, S. ;
Pedersen, A. M. ;
Villemoes, K. ;
Yang, H. ;
Bolund, L. ;
Vajta, G. .
CRYOBIOLOGY, 2007, 54 (02) :181-187
[8]   Intracellular pH of the mouse preimplantation embryo: amino acids act as buffers of intracellular pH [J].
Edwards, LJ ;
Williams, DA ;
Gardner, DK .
HUMAN REPRODUCTION, 1998, 13 (12) :3441-3448
[9]  
EROGLU A, 1993, BERL MUNCH TIERARZTL, V106, P157
[10]   Tryptophan and indole metabolism in immune regulation [J].
Fiore, Alessandra ;
Murray, Peter J. .
CURRENT OPINION IN IMMUNOLOGY, 2021, 70 :7-14