Genome sequencing and annotation of Cercospora sesami, a fungal pathogen causing leaf spot to Sesamum indicum

被引：1
作者：
Sinha, Shagun [1 ,2 ]
Navathe, Sudhir [3 ]
Singh, Sakshi [4 ]
Gupta, Deepak K. [5 ]
Kharwar, Ravindra Nath [2 ]
Chand, Ramesh [1 ]
机构：
[1] Banaras Hindu Univ, Inst Agr Sci, Dept Mycol & Plant Pathol, Varanasi 221005, Uttar Pradesh, India
[2] Banaras Hindu Univ, Inst Sci, Ctr Adv Studies Bot, Varanasi 221005, Uttar Pradesh, India
[3] Agharkar Res Inst, GG Agarkar Rd, Pune 411004, Maharashtra, India
[4] German Canc Res Ctr, Natl Ctr Tumor Dis, Core Unit Mol Tumor Diagnost, D-01307 Dresden, Germany
[5] Neogen Informat Inc, Off 101,First Floor,A-121,Vikas Marg, New Delhi 110092, India
来源：
3 BIOTECH | 2023年 / 13卷 / 02期
关键词：
Cercospora leaf spot; Effectors; Gene annotation; Genome assembly; Plant pathogens; Sesame; FUNCTIONAL ANNOTATION; PROTEIN; PREDICTION; PHYLOGENY; TOOL; L;
D O I：
10.1007/s13205-023-03468-4
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
Cercospora sesami is a plant pathogen that causes leaf spot disease in sesame plants worldwide. In this study, genome sequence assembly of C. sesami isolate Cers 52-10 (MCC 9069) was generated using native paired-end and mate-pair DNA sequencing based on the Illumina HiSeq 2500 platform. The genome assembly of C. sesami is 34.3 Mb in size with an N50 of 26,222 bp and an average GC content of 53.02%. A total number of 10,872 genes were predicted in this study, out of which 9,712 genes were functionally annotated. Genes assigned to carbohydrate-active enzyme classes were also identified during the study. A total of 80 putative effector candidates were predicted and functionally annotated. The C. sesami genome sequence is available at DDBJ/ENA/GenBank, and other associated information is submitted to Mendeley's data.
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页数：11
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