From data to diagnosis: how machine learning is revolutionizing biomarker discovery in idiopathic inflammatory myopathies

被引:9
作者
Mcleish, Emily [1 ]
Slater, Nataliya [1 ]
Mastaglia, Frank L. [1 ]
Needham, Merrilee [1 ]
Coudert, Jerome D. [1 ]
机构
[1] Murdoch Univ, Ctr Mol Med & Innovat Therapeut, Murdoch, WA, Australia
关键词
idiopathic inflammatory myopathies; machine learning; biomarkers; myositis-specific autoantibodies; INCLUSION-BODY MYOSITIS; LOGISTIC-REGRESSION; ANTI-CN1A ANTIBODIES; POLYMYOSITIS; CLASSIFICATION; DERMATOMYOSITIS; AUTOANTIBODIES; SUBCLASSIFICATION; VISUALIZATION; EPIDEMIOLOGY;
D O I
10.1093/bib/bbad514
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Idiopathic inflammatory myopathies (IIMs) are a heterogeneous group of muscle disorders including adult and juvenile dermatomyositis, polymyositis, immune-mediated necrotising myopathy and sporadic inclusion body myositis, all of which present with variable symptoms and disease progression. The identification of effective biomarkers for IIMs has been challenging due to the heterogeneity between IIMs and within IIM subgroups, but recent advances in machine learning (ML) techniques have shown promises in identifying novel biomarkers. This paper reviews recent studies on potential biomarkers for IIM and evaluates their clinical utility. We also explore how data analytic tools and ML algorithms have been used to identify biomarkers, highlighting their potential to advance our understanding and diagnosis of IIM and improve patient outcomes. Overall, ML techniques have great potential to revolutionize biomarker discovery in IIMs and lead to more effective diagnosis and treatment.
引用
收藏
页数:14
相关论文
共 84 条
[1]   Different phenotypes in dermatomyositis associated with anti-MDA5 antibody: Study of 121 cases [J].
Allenbach, Yves ;
Uzunhan, Yurdagul ;
Toquet, Segolene ;
Leroux, Gaelle ;
Gallay, Laure ;
Marquet, Alicia ;
Meyer, Alain ;
Guillaud, Constance ;
Limal, Nicolas ;
Gagnadoux, Frederic ;
Hervier, Baptiste ;
Borie, Raphael ;
Deligny, Christophe ;
Terrier, Benjamin ;
Berezne, Alice ;
Audia, Sylvain ;
Champtiaux, Nicolas ;
Devilliers, Herve ;
Voermans, Nicol ;
Diot, Elizabeth ;
Servettaz, Amelie ;
Marhadour, Thierry ;
Castelain, Vincent ;
Humbert, Sebastien ;
Blanchard-Delaunay, Claire ;
Tieulie, Nathalie ;
Charles, Pierre ;
Gerin, Magdalena ;
Mekinian, Arsene ;
Priou, Pascaline ;
Meurice, Jean Claude ;
Tazi, Abdellatif ;
Cottin, Vincent ;
Miyara, Makoto ;
Grange, Benjamin ;
Israel-Biet, Dominique ;
Phin-Huynh, Sophie ;
Bron, Camille ;
De Saint Martin, Luc ;
Fabien, Nicole ;
Mariampillai, Kuberaka ;
Nunes, Hilario ;
Benveniste, Olivier .
NEUROLOGY, 2020, 95 (01) :E70-E78
[2]   224th ENMC International Workshop: Clinico-sero-pathological classification of immune-mediated necrotizing myopathies Zandvoort, The Netherlands, 14-16 October 2016 [J].
Allenbach, Yves ;
Mammen, Andrew L. ;
Benveniste, Olivier ;
Stenzel, Werner .
NEUROMUSCULAR DISORDERS, 2018, 28 (01) :87-99
[3]   viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia [J].
Amir, El-ad David ;
Davis, Kara L. ;
Tadmor, Michelle D. ;
Simonds, Erin F. ;
Levine, Jacob H. ;
Bendall, Sean C. ;
Shenfeld, Daniel K. ;
Krishnaswamy, Smita ;
Nolan, Garry P. ;
Pe'er, Dana .
NATURE BIOTECHNOLOGY, 2013, 31 (06) :545-+
[4]   Visualization and cellular hierarchy inference of single-cell data using SPADE [J].
Anchang, Benedict ;
Hart, Tom D. P. ;
Bendall, Sean C. ;
Qiu, Peng ;
Bjornson, Zach ;
Linderman, Michael ;
Nolan, Garry P. ;
Plevritis, Sylvia K. .
NATURE PROTOCOLS, 2016, 11 (07) :1264-1279
[5]   An Introduction to Machine Learning [J].
Badillo, Solveig ;
Banfai, Balazs ;
Birzele, Fabian ;
Davydov, Iakov I. ;
Hutchinson, Lucy ;
Kam-Thong, Tony ;
Siebourg-Polster, Juliane ;
Steiert, Bernhard ;
Zhang, Jitao David .
CLINICAL PHARMACOLOGY & THERAPEUTICS, 2020, 107 (04) :871-885
[6]   Epidemiology of inclusion body myositis in the Netherlands:: A nationwide study [J].
Badrising, UA ;
Maat-Schieman, M ;
van Duinen, SG ;
Breedveld, F ;
van Doorn, P ;
van Engelen, B ;
van den Hoogen, F ;
Hoogendijk, J ;
Höweler, C ;
de Jager, A ;
Jennekens, F ;
Koehler, P ;
van der Leeuw, H ;
de Visser, M ;
Verschuuren, JJ ;
Wintzen, AR .
NEUROLOGY, 2000, 55 (09) :1385-1387
[7]   Biomarkers in Inflammatory Myopathies-An Expanded Definition [J].
Benveniste, Olivier ;
Goebel, Hans-Hilmar ;
Stenzel, Werner .
FRONTIERS IN NEUROLOGY, 2019, 10
[8]   Myositis-specific autoantibodies: an important tool to support diagnosis of myositis [J].
Betteridge, Z. ;
McHugh, N. .
JOURNAL OF INTERNAL MEDICINE, 2016, 280 (01) :8-23
[9]   Image texture analysis: methods and comparisons [J].
Bharati, MH ;
Liu, JJ ;
MacGregor, JF .
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2004, 72 (01) :57-71
[10]   POLYMYOSITIS AND DERMATOMYOSITIS .1. [J].
BOHAN, A ;
PETER, JB .
NEW ENGLAND JOURNAL OF MEDICINE, 1975, 292 (07) :344-347