Identification of basement membrane-related biomarkers associated with the diagnosis of osteoarthritis based on machine learning

被引:0
作者
Huang, Xiaojing [1 ]
Meng, Hongming [1 ,2 ]
Shou, Zeyu [2 ]
Yu, Jiahuan [1 ,2 ]
Hu, Kai [2 ]
Chen, Liangyan [1 ,2 ]
Zhou, Han [2 ]
Bai, Zhibiao [1 ]
Chen, Chun [1 ,2 ,3 ,4 ]
机构
[1] Wenzhou Med Univ, Affiliated Hosp 1, Dept Orthoped, Wenzhou 325000, Zhejiang, Peoples R China
[2] Wenzhou Med Univ, Wenzhou 325000, Zhejiang, Peoples R China
[3] Key Lab Intelligent Treatment & Life Support Crit, Wenzhou 325000, Zhejiang, Peoples R China
[4] Zhejiang Engn Res Ctr Hosp Emergency & Proc Digiti, Wenzhou 325000, Zhejiang, Peoples R China
关键词
Osteoarthritis; Immune; Machine learning; Basement membranes; Biological marker;
D O I
10.1186/s12920-023-01601-z
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background Osteoarthritis is a very common clinical disease in middle-aged and elderly individuals, and with the advent of ageing, the incidence of this disease is gradually increasing. There are few studies on the role of basement membrane (BM)-related genes in OA.Method We used bioinformatics and machine learning methods to identify important genes related to BMs in OA patients and performed immune infiltration analysis, lncRNA-miRNA-mRNA network prediction, ROC analysis, and qRT-PCR.Result Based on the results of machine learning, we determined that LAMA2 and NID2 were the key diagnostic genes of OA, which were confirmed by ROC and qRT-PCR analyses. Immune analysis showed that LAMA2 and NID2 were closely related to resting memory CD4 T cells, mast cells and plasma cells. Two lncRNAs, XIST and TTTY15, were simultaneously identified, and lncRNA-miRNA-mRNA network prediction was performed.Conclusion LAMA2 and NID2 are important potential targets for the diagnosis and treatment of OA.
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页数:11
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