Computational methods in glaucoma research: Current status and future outlook

被引:5
作者
Kim, Minjae J. [1 ]
Martin, Cole A. [1 ]
Kim, Jinhwa [2 ]
Jablonski, Monica M. [1 ,3 ]
机构
[1] Univ Tennessee, Hlth Sci Ctr, Hamilton Eye Inst, Dept Ophthalmol, Memphis, TN 38163 USA
[2] Sogang Univ, Grad Sch Artificial Intelligence, Grad Sch Metaverse, Dept Management Informat Syst, 1 Shinsoo Dong, Seoul, South Korea
[3] 930 Madison Ave,Suite 732, Memphis, TN 38163 USA
关键词
Glaucoma; In-silico methods; Systems genetics; Molecular dynamics (MD) simulation; Machine learning artificial intelligence (AI); Deep learning artificial intelligence (AI); MOLECULAR-DYNAMICS SIMULATIONS; CONVOLUTIONAL NEURAL-NETWORKS; OPEN-ANGLE GLAUCOMA; ARTIFICIAL-INTELLIGENCE; FORCE-FIELD; DOCKING; PREDICTION; MECHANISMS; DISEASES; TRAITS;
D O I
10.1016/j.mam.2023.101222
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Advancements in computational techniques have transformed glaucoma research, providing a deeper understanding of genetics, disease mechanisms, and potential therapeutic targets. Systems genetics integrates genomic and clinical data, aiding in identifying drug targets, comprehending disease mechanisms, and personalizing treatment strategies for glaucoma. Molecular dynamics simulations offer valuable molecular-level insights into glaucoma-related biomolecule behavior and drug interactions, guiding experimental studies and drug discovery efforts. Artificial intelligence (AI) technologies hold promise in revolutionizing glaucoma research, enhancing disease diagnosis, target identification, and drug candidate selection. The generalized protocols for systems genetics, MD simulations, and AI model development are included as a guide for glaucoma researchers. These computational methods, however, are not separate and work harmoniously together to discover novel ways to combat glaucoma. Ongoing research and progresses in genomics technologies, MD simulations, and AI methodologies project computational methods to become an integral part of glaucoma research in the future.
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页数:21
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共 186 条
[1]   Capsaicin, The Vanilloid Receptor TRPV1 Agonist in Neuroprotection: Mechanisms Involved and Significance [J].
Abdel-Salam, Omar M. E. ;
Mozsik, Gyula .
NEUROCHEMICAL RESEARCH, 2023, 48 (11) :3296-3315
[2]   Rare protective variants and glaucoma-relevant cell stressors modulate Angiopoietin-like 7 expression [J].
Aboobakar, Inas F. ;
Collantes, Edward Ryan A. ;
Hauser, Michael A. ;
Stamer, W. Daniel ;
Wiggs, Janey L. .
HUMAN MOLECULAR GENETICS, 2023, 32 (15) :2523-2531
[3]   Emerging Landscape of Computational Modeling in Pharmaceutical Development [J].
Abramov, Yuriy A. ;
Sun, Guangxu ;
Zeng, Qun .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2022, 62 (05) :1160-1171
[4]   Retinal Blood Vessel Tracking and Diameter Estimation via Gaussian Process With Rider Optimization Algorithm [J].
Ahmad, Nehal ;
Lai, Kuan-Ting ;
Tanveer, M. .
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2024, 28 (03) :1173-1184
[5]   New Acetamide-Sulfonamide-Containing Scaffolds: Antiurease Activity Screening, Structure-Activity Relationship, Kinetics Mechanism, Molecular Docking, and MD Simulation Studies [J].
Ahmad, Saghir ;
Qadir, Muhammad Abdul ;
Ahmed, Mahmood ;
Imran, Muhammad ;
Yousaf, Numan ;
Wani, Tanveer A. ;
Zargar, Seema ;
Ali, Ijaz ;
Muddassar, Muhammad .
MOLECULES, 2023, 28 (14)
[6]   TD-DFT, DFT, docking, MD simulations, and concentration-dependent SERS investigations of a bioactive trifluoromethyl derivative having human acetylcholinesterase and butyrylcholinesterase in silver colloids [J].
Al-Otaibi, Jamelah S. S. ;
Mary, Y. Sheena ;
Mary, Y. Shyma ;
Kratky, Martin ;
Vinsova, Jarmila ;
Mahmood, Tariq ;
Gamberini, Maria Cristina ;
Nair, Deepthi S. Rajendran S. .
JOURNAL OF MOLECULAR MODELING, 2023, 29 (08)
[7]   The role of regulatory variation in complex traits and disease [J].
Albert, Frank W. ;
Kruglyak, Leonid .
NATURE REVIEWS GENETICS, 2015, 16 (04) :197-212
[8]   Performance Evaluation of Different Object Detection Models for the Segmentation of Optical Cups and Discs [J].
Alfonso-Francia, Gendry ;
Carlos Pedraza-Ortega, Jesus ;
Badillo-Fernandez, Mariana ;
Toledano-Ayala, Manuel ;
Antonio Aceves-Fernandez, Marco ;
Rodriguez-Resendiz, Juvenal ;
Ko, Seok-Bum ;
Tovar-Arriaga, Saul .
DIAGNOSTICS, 2022, 12 (12)
[9]   Towards a better understanding of annotation tools for medical imaging: a survey [J].
Aljabri, Manar ;
AlAmir, Manal ;
AlGhamdi, Manal ;
Abdel-Mottaleb, Mohamed ;
Collado-Mesa, Fernando .
MULTIMEDIA TOOLS AND APPLICATIONS, 2022, 81 (18) :25877-25911
[10]   Synthesis of some new 2-(substituted-phenyl)imidazo[4,5-c] and [4,5-b]pyridine derivatives and their antimicrobial activities [J].
Altaib, Moftah ;
Doganc, Fatima ;
Kaskatepe, Banu ;
Goker, Hakan .
MOLECULAR DIVERSITY, 2024, 28 (05) :2817-2829