The SWI/SNF chromatin remodeling complexes BAF and PBAF differentially regulate epigenetic transitions in exhausted CD8+T cells

被引:42
作者
Baxter, Amy E. [1 ,2 ]
Huang, Hua [1 ,2 ,3 ]
Giles, Josephine R. [1 ,2 ,4 ]
Chen, Zeyu [1 ,2 ,10 ]
Wu, Jennifer E. [1 ,2 ,4 ]
Drury, Sydney [1 ,5 ,11 ]
Dalton, Katherine [1 ,5 ,12 ]
Park, Simone L. [1 ,2 ]
Torres, Leonel [1 ,6 ]
Simone, Brandon W. [6 ]
Klapholz, Max [1 ,2 ,4 ,7 ]
Ngiow, Shin Foong [1 ,2 ,4 ]
Freilich, Elizabeth [1 ,3 ,8 ]
Manne, Sasikanth [1 ,2 ]
Alcalde, Victor [1 ,2 ]
Ekshyyan, Viktoriya [1 ,2 ]
Berger, Shelley L. [3 ,8 ,9 ]
Shi, Junwei [1 ,3 ,8 ]
Jordan, Martha S. [1 ,4 ,5 ]
Wherry, John [1 ,2 ,3 ,4 ]
机构
[1] Univ Penn, Perelman Sch Med, Inst Immunol & Immune Hlth, Philadelphia, PA 19104 USA
[2] Univ Penn, Dept Syst Pharmacol & Translat Therapeut, Perelman Sch Med, Philadelphia, PA 19104 USA
[3] Univ Penn, Perelman Sch Med, Epigenet Inst, Philadelphia, PA 19104 USA
[4] Univ Penn, Perelman Sch Med, Parker Inst Canc Immunotherapy, Philadelphia, PA 19104 USA
[5] Univ Penn, Dept Pathol & Lab Med, Perelman Sch Med, Philadelphia, PA 19104 USA
[6] Univ Penn, Perelman Sch Med, Ctr Cellular Immunotherapies, Philadelphia, PA 19104 USA
[7] Univ Penn, Perelman Sch Med, Dept Radiat Oncol, Philadelphia, PA 19104 USA
[8] Univ Penn, Dept Canc Biol, Perelman Sch Med, Philadelphia, PA 19104 USA
[9] Univ Penn, Dept Cell & Dev Biol, Perelman Sch Med, Philadelphia, PA 19104 USA
[10] Dana Farber Canc Inst, Dept Canc Biol, Boston, MA 02215 USA
[11] Penn State Coll Med, Dept Cellular & Mol Physiol, Hershey, PA 17033 USA
[12] Temple Univ, Lewis Katz Sch Med, Philadelphia, PA 19140 USA
基金
澳大利亚国家健康与医学研究理事会;
关键词
CD8(+) T-CELLS; TERMINAL DIFFERENTIATION; EFFECTOR; CHECKPOINT; GENERATION; SUBSETS; GENOME; BET; IMMUNOTHERAPY; ACCESSIBILITY;
D O I
10.1016/j.immuni.2023.05.008
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
CD8+ T cell exhaustion (Tex) limits disease control during chronic viral infections and cancer. Here, we investigated the epigenetic factors mediating major chromatin-remodeling events in Tex-cell development. A protein-domain-focused in vivo CRISPR screen identified distinct functions for two versions of the SWI/ SNF chromatin-remodeling complex in Tex-cell differentiation. Depletion of the canonical SWI/SNF form, BAF, impaired initial CD8+ T cell responses in acute and chronic infection. In contrast, disruption of PBAF enhanced Tex-cell proliferation and survival. Mechanistically, PBAF regulated the epigenetic and transcrip-tional transition from TCF-1+ progenitor Tex cells to more differentiated TCF-1- Tex subsets. Whereas PBAF acted to preserve Tex progenitor biology, BAF was required to generate effector-like Tex cells, suggesting that the balance of these factors coordinates Tex-cell subset differentiation. Targeting PBAF improved tumor control both alone and in combination with anti-PD-L1 immunotherapy. Thus, PBAF may present a therapeu-tic target in cancer immunotherapy.
引用
收藏
页码:1320 / +
页数:32
相关论文
共 122 条
[1]   Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation [J].
Abdel-Hakeem, Mohamed S. ;
Manne, Sasikanth ;
Beltra, Jean-Christophe ;
Stelekati, Erietta ;
Chen, Zeyu ;
Nzingha, Kito ;
Ali, Mohammed-Alkhatim ;
Johnson, John L. ;
Giles, Josephine R. ;
Mathew, Divij ;
Greenplate, Allison R. ;
Vahedi, Golnaz ;
Wherry, E. John .
NATURE IMMUNOLOGY, 2021, 22 (08) :1008-+
[2]   TOX reinforces the phenotype and longevity of exhausted T cells in chronic viral infection [J].
Alfei, Francesca ;
Kanev, Kristiyan ;
Hofmann, Maike ;
Wu, Ming ;
Ghoneim, Hazem E. ;
Roelli, Patrick ;
Utzschneider, Daniel T. ;
von Hoesslin, Madlaina ;
Cullen, Jolie G. ;
Fan, Yiping ;
Eisenberg, Vasyl ;
Wohlleber, Dirk ;
Steiger, Katja ;
Merkler, Doron ;
Delorenzi, Mauro ;
Knolle, Percy A. ;
Cohen, Cyrille J. ;
Thimme, Robert ;
Youngblood, Benjamin ;
Zehn, Dietmar .
NATURE, 2019, 571 (7764) :265-+
[3]   Interpretation of T cell states from single-cell transcriptomics data using reference atlases [J].
Andreatta, Massimo ;
Corria-Osorio, Jesus ;
Muller, Soren ;
Cubas, Rafael ;
Coukos, George ;
Carmona, Santiago J. .
NATURE COMMUNICATIONS, 2021, 12 (01)
[4]   Progressive Loss of Memory T Cell Potential and Commitment to Exhaustion during Chronic Viral Infection [J].
Angelosanto, Jill M. ;
Blackburn, Shawn D. ;
Crawford, Alison ;
Wherry, E. John .
JOURNAL OF VIROLOGY, 2012, 86 (15) :8161-8170
[5]   Restoring function in exhausted CD8 T cells during chronic viral infection [J].
Barber, DL ;
Wherry, EJ ;
Masopust, D ;
Zhu, BG ;
Allison, JP ;
Sharpe, AH ;
Freeman, GJ ;
Ahmed, R .
NATURE, 2006, 439 (7077) :682-687
[6]   Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence [J].
Belk, Julia A. ;
Yao, Winnie ;
Ly, Nghi ;
Freitas, Katherine A. ;
Chen, Yan-Ting ;
Shi, Quanming ;
Valencia, Alfredo M. ;
Shifrut, Eric ;
Kale, Nupura ;
Yost, Kathryn E. ;
V. Duffy, Connor ;
Daniel, Bence ;
Hwee, Madeline A. ;
Miao, Zhuang ;
Ashworth, Alan ;
Mackall, Crystal L. ;
Marson, Alexander ;
Carnevale, Julia ;
Vardhana, Santosh A. ;
Satpathy, Ansuman T. .
CANCER CELL, 2022, 40 (07) :768-+
[7]   Developmental Relationships of Four Exhausted CD8+ T Cell Subsets Reveals Underlying Transcriptional and Epigenetic Landscape Control Mechanisms [J].
Beltra, Jean-Christophe ;
Manne, Sasikanth ;
Abdel-Hakeem, Mohamed S. ;
Kurachi, Makoto ;
Giles, Josephine R. ;
Chen, Zeyu ;
Casella, Valentina ;
Ngiow, Shin Foong ;
Khan, Omar ;
Huang, Yinghui Jane ;
Yan, Patrick ;
Nzingha, Kito ;
Xu, Wei ;
Amaravadi, Ravi K. ;
Xu, Xiaowei ;
Karakousis, Giorgos C. ;
Mitchell, Tara C. ;
Schuchter, Lynn M. ;
Huang, Alexander C. ;
Wherry, E. John .
IMMUNITY, 2020, 52 (05) :825-+
[8]   Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells [J].
Bengsch, Bertram ;
Ohtani, Takuya ;
Khan, Omar ;
Setty, Manu ;
Manne, Sasikanth ;
O'Brien, Shaun ;
Gherardini, Pier Federico ;
Herati, Ramin Sedaghat ;
Huang, Alexander C. ;
Chang, Kyong-Mi ;
Newell, Evan W. ;
Bovenschen, Niels ;
Pe'er, Dana ;
Albelda, Steven M. ;
Wherry, E. John .
IMMUNITY, 2018, 48 (05) :1029-+
[9]   Selective expansion of a subset of exhausted CD8 T cells by αPD-L1 blockade [J].
Blackburn, Shawn D. ;
Shin, Haina ;
Freeman, Gordon J. ;
Wherry, E. John .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (39) :15016-15021
[10]   Easy quantitative assessment of genome editing by sequence trace decomposition [J].
Brinkman, Eva K. ;
Chen, Tao ;
Amendola, Mario ;
van Steensel, Bas .
NUCLEIC ACIDS RESEARCH, 2014, 42 (22)