Ferroptosis-Related lncRNA to Predict the Clinical Outcomes and Molecular Characteristics of Kidney Renal Papillary Cell Carcinoma

被引:1
|
作者
Gong, Yubo [1 ]
Zhang, Chenchen [1 ]
Li, Hao [1 ]
Yu, Xiaojie [1 ]
Li, Yuejia [1 ]
Liu, Zhiguo [1 ]
He, Ruyi [1 ,2 ]
机构
[1] Wuhan Polytech Univ, Sch Life Sci & Technol, Wuhan 430023, Peoples R China
[2] Hubei Univ, Sch Life Sci, State Key Lab Biocatalysis & Enzyme Engn, Wuhan 430062, Peoples R China
关键词
ferroptosis; lncRNA; KIRP; clinical outcome; risk model; TUMOR-SUPPRESSOR; CANCER; RECEPTOR; DEATH;
D O I
10.3390/cimb46030123
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Kidney renal papillary cell carcinoma (KIRP) is a highly heterogeneous type of kidney cancer, resulting in limited effective prognostic targets for KIRP patients. Long non-coding RNAs (lncRNAs) have emerged as crucial regulators in the regulation of ferroptosis and iron metabolism, making them potential targets for the treatment and prognosis of KIRP. In this study, we constructed a ferroptosis-related lncRNA risk score model (FRM) based on the TCGA-KIRP dataset, which represents a novel subtype of KIRP not previously reported. The model demonstrated promising diagnostic accuracy and holds potential for clinical translation. We observed significant differences in metabolic activities, immune microenvironment, mutation landscape, ferroptosis sensitivity, and drug sensitivity between different risk groups. The high-risk groups exhibit significantly higher fractions of cancer-associated fibroblasts (CAFs), hematopoietic stem cells (HSC), and pericytes. Drugs (IC50) analysis provided a range of medication options based on different FRM typing. Additionally, we employed single-cell transcriptomics to further analyze the impact of immune invasion on the occurrence and development of KIRP. Overall, we have developed an accurate prognostic model based on the expression patterns of ferroptosis-related lncRNAs for KIRP. This model has the potential to contribute to the evaluation of patient prognosis, molecular characteristics, and treatment modalities, and can be further translated into clinical applications.
引用
收藏
页码:1886 / 1903
页数:18
相关论文
共 50 条
  • [41] Survival prediction of kidney renal papillary cell carcinoma by comprehensive LncRNA characterization
    Lan, Huihua
    Zeng, Jianghui
    Chen, Gang
    Huang, Huayi
    ONCOTARGET, 2017, 8 (67) : 110811 - 110829
  • [42] Ferroptosis-related lncRNA signature predicts the prognosis and immune microenvironment of hepatocellular carcinoma
    Fang, Chongkai
    Liu, Silin
    Feng, Kunliang
    Huang, Chaoyuan
    Zhang, Ying
    Wang, Jinan
    Lin, Hongtong
    Wang, Junyan
    Zhong, Chong
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [43] A Promising Esophageal Cancer Prognostic Signature of Ferroptosis-Related LncRNA to Predict Immune Scenery and Immunotherapy Response
    Liu, Xiaoxiao
    Shi, Xiaobo
    Guo, Wei
    Ke, Yue
    Li, Yuxing
    Pan, Shupei
    Li, Xiaona
    Liu, Mei
    Liu, Mingzhu
    Wang, Yuchen
    Ruan, Qinli
    Ma, Hongbing
    INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2021, 14 : 5845 - 5862
  • [44] A Novel Ferroptosis-Related Gene Signature to Predict Prognosis of Esophageal Carcinoma
    Wang, Jian
    Guo, Ziming
    Sun, Fei
    Xu, Tian
    Wang, Jianlin
    Yu, Jingping
    JOURNAL OF ONCOLOGY, 2022, 2022
  • [45] The construction of a novel ferroptosis-related lncRNA model to predict prognosis in colorectal cancer patients
    Chen, Weihong
    Deng, Jianzhi
    Zhou, Yuehan
    MEDICINE, 2023, 102 (10) : E33114
  • [46] Ferroptosis-Related Gene Model to Predict Overall Survival of Ovarian Carcinoma
    Yang, Liuqing
    Tian, Saisai
    Chen, Yun
    Miao, Chenyun
    Zhao, Ying
    Wang, Ruye
    Zhang, Qin
    JOURNAL OF ONCOLOGY, 2021, 2021
  • [47] Construction of a ferroptosis-related signature based on seven lncRNAs for prognosis and immune landscape in clear cell renal cell carcinoma
    Shi-Yao Wei
    Bei Feng
    Min Bi
    Hai-Ying Guo
    Shang-Wei Ning
    Rui Cui
    BMC Medical Genomics, 15
  • [48] Clinical characteristics and outcomes in renal transplant recipients with renal cell carcinoma in the native kidney
    Sun, In O.
    Ko, Yu Mi
    Kim, Eun Young
    Park, Kyung Seon
    Jung, Hong Soon
    Ko, Sun Hye
    Chung, Byung Ha
    Choi, Bum Soon
    Park, Cheol Whee
    Kim, Yong Soo
    Yang, Chul Woo
    KOREAN JOURNAL OF INTERNAL MEDICINE, 2013, 28 (03) : 347 - 351
  • [49] Integrated analysis of a competing endogenous RNA network reveals a ferroptosis-related 6-lncRNA prognostic signature in clear cell renal cell carcinoma
    Zheng, Qing
    Gong, Zhenqi
    Lin, Shaoxiong
    Ou, Dehua
    Lin, Weilong
    Shen, Peilin
    ADVANCES IN CLINICAL AND EXPERIMENTAL MEDICINE, 2024, 33 (12): : 1391 - 1407
  • [50] Identification and validation of a ferroptosis-related signature for prediction of the prognosis and tumor microenvironment in patients with chromophobe renal cell carcinoma
    Liu, Shuai
    Yao, Yu
    Hou, Mingyu
    Mei, Jingchang
    Sun, Lijiang
    Zhang, Guiming
    BMC CANCER, 2023, 23 (01)