Whole-exome sequencing prioritizes candidate genes for hereditary cataract in the Emory mouse mutant

被引:3
作者
Bennett, Thomas M. [1 ]
Zhou, Yuefang [1 ]
Meyer, Kacie J. [2 ]
Anderson, Michael G. [2 ]
Shiels, Alan [1 ,3 ]
机构
[1] Washington Univ, Dept Ophthalmol & Visual Sci, Sch Med, St Louis, MO 63110 USA
[2] Univ Iowa, Carver Coll Med, Dept Mol Physiol & Biophys, Iowa City, IA 52242 USA
[3] Washington Univ, Ophthalmol & Visual Sci, Sch Med, 660 S Euclid Ave,Box 8096, St. Louis, MO 63110 USA
来源
G3-GENES GENOMES GENETICS | 2023年 / 13卷 / 05期
关键词
lens; cataract; CFW-Em; J mouse; Prx; Adamts10; Abhd12; RESTRICTION DELAYS CATARACT; CALORIE RESTRICTION; ABHD12; MUTATIONS; LENS; KINASE; LOCUS; MODEL; IDENTIFICATION; BIOSYNTHESIS; PROGRESSION;
D O I
10.1093/g3journal/jkad055
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The Emory cataract (Em) mouse mutant has long been proposed as an animal model for age-related or senile cataract in humans-a leading cause of visual impairment. However, the genetic defect(s) underlying the autosomal dominant Em phenotype remains elusive. Here, we confirmed development of the cataract phenotype in commercially available Em/J mice [but not ancestral Carworth Farms White (CFW) mice] at 6-8 months of age and undertook whole-exome sequencing of candidate genes for Em. Analysis of coding and splice-site variants did not identify any disease-causing/associated mutations in over 450 genes known to underlie inherited and age-related forms of cataract and other lens disorders in humans and mice, including genes for lens crystallins, membrane/cytoskeleton proteins, DNA/RNA-binding proteins, and those associated with syndromic/systemic forms of cataract. However, we identified three cataract/lens-associated genes each with one novel homozygous variant including predicted missense substitutions in Prx (p.R167C) and Adamts10 (p.P761L) and a disruptive in-frame deletion variant (predicted missense) in Abhd12 (p.L30_A32delinsS) that were absent in CFW and over 35 other mouse strains. In silico analysis predicted that the missense substitutions in Prx and Adamts10 were borderline neutral/damaging and neutral, respectively, at the protein function level, whereas, that in Abhd12 was functionally damaging. Both the human counterparts of Adamts10 and Abhd12 are clinically associated with syndromic forms of cataract known as Weil-Marchesani syndrome 1 and polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract syndrome, respectively. Overall, while we cannot exclude Prx and Adamts10, our data suggest that Abhd12 is a promising candidate gene for cataract in the Em/J mouse.
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页数:14
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共 70 条
[1]   Identification of a Truncation Mutation of Acylglycerol Kinase (AGK) Gene in a Novel Autosomal Recessive Cataract Locus [J].
Aldahmesh, Mohammed A. ;
Khan, Arif O. ;
Mohamed, Jawahir Y. ;
Alghamdi, Mohammed H. ;
Alkuraya, Fowzan S. .
HUMAN MUTATION, 2012, 33 (06) :960-962
[2]   The Tyr (albino) locus of the laboratory mouse [J].
Beermann, F ;
Orlow, SJ ;
Lamoreux, ML .
MAMMALIAN GENOME, 2004, 15 (10) :749-758
[3]   Regional changes of AQP0-dependent square array junction and gap junction associated with cortical cataract formation in the Emory mutant mouse [J].
Biswas, Sondip K. ;
Brako, Lawrence ;
Gu, Sumin ;
Jiang, Jean X. ;
Lo, Woo-Kuen .
EXPERIMENTAL EYE RESEARCH, 2014, 127 :132-142
[4]   ABHD12 controls brain lysophosphatidylserine pathways that are deregulated in a murine model of the neurodegenerative disease PHARC [J].
Blankman, Jacqueline L. ;
Long, Jonathan Z. ;
Trauger, Sunia A. ;
Siuzdak, Gary ;
Cravatt, Benjamin F. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (04) :1500-1505
[5]   The origins and uses of mouse outbred stocks [J].
Chia, R ;
Achilli, F ;
Festing, MFW ;
Fisher, EMC .
NATURE GENETICS, 2005, 37 (11) :1181-1186
[6]   PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels [J].
Choi, Yongwook ;
Chan, Agnes P. .
BIOINFORMATICS, 2015, 31 (16) :2745-2747
[7]   Ensembl 2022 [J].
Cunningham, Fiona ;
Allen, James E. ;
Allen, Jamie ;
Alvarez-Jarreta, Jorge ;
Amode, M. Ridwan ;
Armean, Irina M. ;
Austine-Orimoloye, Olanrewaju ;
Azov, Andrey G. ;
Barnes, If ;
Bennett, Ruth ;
Berry, Andrew ;
Bhai, Jyothish ;
Bignell, Alexandra ;
Billis, Konstantinos ;
Boddu, Sanjay ;
Brooks, Lucy ;
Charkhchi, Mehrnaz ;
Cummins, Carla ;
Fioretto, Luca Da Rin ;
Davidson, Claire ;
Dodiya, Kamalkumar ;
Donaldson, Sarah ;
El Houdaigui, Bilal ;
El Naboulsi, Tamara ;
Fatima, Reham ;
Giron, Carlos Garcia ;
Genez, Thiago ;
Martinez, Jose Gonzalez ;
Guijarro-Clarke, Cristina ;
Gymer, Arthur ;
Hardy, Matthew ;
Hollis, Zoe ;
Hourlier, Thibaut ;
Hunt, Toby ;
Juettemann, Thomas ;
Kaikala, Vinay ;
Kay, Mike ;
Lavidas, Ilias ;
Le, Tuan ;
Lemos, Diana ;
Marugan, Jose Carlos ;
Mohanan, Shamika ;
Mushtaq, Aleena ;
Naven, Marc ;
Ogeh, Denye N. ;
Parker, Anne ;
Parton, Andrew ;
Perry, Malcolm ;
Pilizota, Ivana ;
Prosovetskaia, Irina .
NUCLEIC ACIDS RESEARCH, 2022, 50 (D1) :D988-D995
[8]   ADAMTS10 mutations in autosomal recessive Weill-Marchesani syndrome [J].
Dagoneau, N ;
Benoist-Lasselin, C ;
Huber, C ;
Faivre, L ;
Mégarbané, A ;
Alswaid, A ;
Dollfus, H ;
Alembik, Y ;
Munnich, A ;
Legeai-Mallet, L ;
Cormier-Daire, V .
AMERICAN JOURNAL OF HUMAN GENETICS, 2004, 75 (05) :801-806
[9]   Insights on ADAMTS proteases and ADAMTS-like proteins from mammalian genetics [J].
Dubail, Johanne ;
Apte, Suneel S. .
MATRIX BIOLOGY, 2015, 44-46 :24-37
[10]   Targeted next-generation sequencing identifies a homozygous nonsense mutation in ABHD12, the gene underlying PHARC, in a family clinically diagnosed with Usher syndrome type 3 [J].
Eisenberger, Tobias ;
Slim, Rima ;
Mansour, Ahmad ;
Nauck, Markus ;
Nuernberg, Gudrun ;
Nuernberg, Peter ;
Decker, Christian ;
Dafinger, Claudia ;
Ebermann, Inga ;
Bergmann, Carsten ;
Bolz, Hanno Joern .
ORPHANET JOURNAL OF RARE DISEASES, 2012, 7