Genome-wide SNPs reveal clonality and population genetic structure of Nymphoides peltata in Japan (Menyanthaceae)

被引：1
作者：
Asakawa, Akira [1 ]
Murakami, Shoki [1 ]
Horie, Sachiko [2 ]
Matsuo, Ayumi [3 ]
Suyama, Yoshihisa [3 ]
Fujii, Shinji [4 ]
Maki, Masayuki [1 ,2 ]
机构：
[1] Tohoku Univ, Grad Sch Life Sci, Sendai 9800862, Japan
[2] Tohoku Univ, Bot Gardens, Sendai 9800862, Japan
[3] Tohoku Univ, Grad Sch Agr Sci, Kawatabi Field Sci Ctr, Osaki 9896711, Japan
[4] Univ Human Environm, Dept Environm Sci, Okazaki 4443505, Japan
来源：
AQUATIC BOTANY | 2024年 / 190卷
关键词：
Anthropochory; Clone identification; Genetic differentiation; Nymphoides peltata; SNPs; POTAMOGETON-PECTINATUS; REPRODUCTION; DIVERSITY; CONSEQUENCES; PLANTS; WATER;
D O I：
10.1016/j.aquabot.2023.103720
中图分类号：
Q94 [植物学];
学科分类号：
071001 ;
摘要：
The clonal diversity of Nymphoides peltata in Japan was estimated using genome-wide SNPs. In total, 27 clones were detected by considering the genetic distances between clones. The number of clones was much smaller than the estimate of 61 from a previous study that used SSR (Short Sequence Repeats) markers. This may be because population have diminished due to environmental deterioration over the past decade, fewer samples were analyzed in this study, or there were technical problems with the SSR markers used in the previous study. The populations of N. peltata were genetically differentiated between the western and eastern regions of the Japanese archipelago. Artificial movements may have occurred in a few populations.
引用
收藏
页数：5
相关论文
共 50 条
  • [21] Genome-Wide Genetic Structure of Henan Indigenous Chicken Breeds
    Zhi, Yihao
    Wang, Dandan
    Zhang, Ke
    Wang, Yangyang
    Geng, Wanzhuo
    Chen, Botong
    Li, Hong
    Li, Zhuanjian
    Tian, Yadong
    Kang, Xiangtao
    Liu, Xiaojun
    ANIMALS, 2023, 13 (04):
  • [22] Genetic Diversity, Population Structure, and Linkage Disequilibrium of a Core Collection of Ziziphus jujuba Assessed with Genome-wide SNPs Developed by Genotyping-by-sequencing and SSR Markers
    Chen, Wu
    Hou, Lu
    Zhang, Zhiyong
    Pang, Xiaoming
    Li, Yingyue
    FRONTIERS IN PLANT SCIENCE, 2017, 8
  • [23] Population structure and genome-wide patterns of variation in Ireland and Britain
    O'Dushlaine, Colm T.
    Morris, Derek
    Moskvina, Valentina
    Gill, Michael
    Corvin, Aiden
    Wilson, James F.
    Cavalleri, Gianpiero L.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2010, 18 (11) : 1248 - 1254
  • [24] Deciphering the patterns of genetic admixture and diversity in southern European cattle using genome-wide SNPs
    Upadhyay, Maulik
    Bortoluzzi, Chiara
    Barbato, Mario
    Ajmone-Marsan, Paolo
    Colli, Licia
    Ginja, Catarina
    Sonstegard, Tad S.
    Bosse, Mirte
    Lenstra, Johannes A.
    Groenen, Martien A. M.
    Crooijrnans, Richard P. M. A.
    EVOLUTIONARY APPLICATIONS, 2019, 12 (05): : 951 - 963
  • [25] Revisiting demographic processes in cattle with genome-wide population genetic analysis
    Orozco-terWengel, Pablo
    Barbato, Mario
    Nicolazzi, Ezequiel
    Biscarini, Filippo
    Milanesi, Marco
    Davies, Wyn
    Williams, Don
    Stella, Alessandra
    Ajmone-Marsan, Paolo
    Bruford, Michael W.
    FRONTIERS IN GENETICS, 2015, 6
  • [26] Genetic diversity, population structure, and a genome-wide association study of sorghum lines assembled for breeding in Uganda
    Kasule, Faizo
    Alladassi, Boris M. E.
    Aru, Charles John
    Adikini, Scovia
    Biruma, Moses
    Ugen, Michael Adrogu
    Kakeeto, Ronald
    Esuma, Williams
    FRONTIERS IN PLANT SCIENCE, 2024, 15
  • [27] Expanded genome-wide comparisons give novel insights into population structure and genetic heterogeneity ofLeishmania tropicacomplex
    Salloum, Tamara
    Moussa, Rim
    Rahy, Ryan
    Al Deek, Jospin
    Khalifeh, Ibrahim
    El Hajj, Rana
    Hall, Neil
    Hirt, Robert P.
    Tokajian, Sima
    PLOS NEGLECTED TROPICAL DISEASES, 2020, 14 (09): : 1 - 27
  • [28] Genome-wide investigations reveal the population structure and selection signatures of Nigerian cattle adaptation in the sub-Saharan tropics
    Mauki, David H.
    Tijjani, Abdulfatai
    Ma, Cheng
    Ng'ang'a, Said, I
    Mark, Akanbi, I
    Sanke, Oscar J.
    Abdussamad, Abdussamad M.
    Olaogun, Sunday C.
    Ibrahim, Jebi
    Dawuda, Philip M.
    Mangbon, Godwin F.
    Kazwala, Rudovick R.
    Gwakisa, Paul S.
    Yin, Ting-Ting
    Li, Yan
    Peng, Min-Sheng
    Adeola, Adeniyi C.
    Zhang, Ya-Ping
    BMC GENOMICS, 2022, 23 (01)
  • [29] Genetic analysis of a Kaijiang duck conservation population through genome-wide scan
    Shen, Z.
    Zhang, T.
    Twumasi, G.
    Zhang, J.
    Wang, J.
    Xi, Y.
    Wang, R.
    Wang, J.
    Zhang, R.
    Liu, H.
    BRITISH POULTRY SCIENCE, 2024, 65 (04) : 378 - 386
  • [30] Genome-wide population genetic analysis identifies evolutionary forces establishing continuous population divergence
    Takahashi, Yuma
    ECOLOGICAL RESEARCH, 2017, 32 (04) : 461 - 468
12345