DNA barcoding of the family Sparidae along the coast of China and revelation of potential cryptic diversity in the IndoWest Pacific oceans based on COI and 16S rRNA genes

被引:1
作者
吴仁协 [1 ]
张浩冉 [1 ]
刘静 [2 ]
牛素芳 [1 ]
肖瑶 [1 ]
陈咏霞 [3 ]
机构
[1] College of Fisheries,Guangdong Ocean University
[2] Laboratory of Marine Organism Taxonomy and Phylogeny,Institute of Oceanology,Chinese Academy of Sciences
[3] College of Life Sciences,Hebei University
关键词
Sparidae; DNA barcoding; species delimitation; cryptic species; Chinese coast; Indo-West Pacific;
D O I
暂无
中图分类号
Q953 [动物遗传学];
学科分类号
071007 ; 090501 ;
摘要
Sparids are of considerable economic importance in marine fishery and aquaculture in China, and the species diversity of this group is considered relatively high. However, the accurate species identification and delimitation of sparids in China remain unaddressed. In this study, we used mitochondrial cytochrome oxidase subunit ?(COI) and 16S ribosomal RNA(16S) genes to conduct DNA barcoding and species delimitation in eleven sparid species from the coastal waters of China. Based on Kimura-2 parameter genetic distances, the mean intraspecific/interspecific variation for COI and 16S were calculated as 0.004/0.152 and 0.002/0.072, respectively. All the conspecific individuals formed monophyletic clusters in neighbour-joining trees of both markers. An obvious barcoding gap was detected for each species, and a common genetic threshold of 1.3% sequence divergence was defined for species delimitation in both markers. Although the sequence variation of 16S was generally lower than that of COI, the results indicated that sparid species could be ef fectively and accurately identified and delimited by COI as well as 16S. Thus, we propose that the COI gene serve as the standard DNA barcode for sparids, and that the 16S gene could also be an ideal candidate barcode. Moreover, each of the six sparid species( Argyrops spinifer, Rhabdosargus sarba, Dentex hypselosomus, Acanthopagrus latus, Acanthopagrus australis and Acanthopagrus berda) showed high intraspecific divergence(>1.3% genetic threshold) with the remarkable geographic lineages in the Indo-West Pacific oceans, which supported that potential unrecognized cryptic species were in them. The potential cryptic diversity revealed here might be primarily attributed to the allopatric divergences caused by the long-term geographic isolation between the Indian and West Pacific oceans or between the opposite sides of the Indian Ocean. The results further suggest that a revision of taxonomic status of these species is required, followed by development of a biodiversity conservation strategy.
引用
收藏
页码:1753 / 1770
页数:18
相关论文
共 61 条
[1]   基于线粒体COI基因序列的中国鲷科鱼类系统进化关系 [J].
陈咏霞 ;
吴仁协 ;
梁娜 ;
刘静 .
海洋与湖沼, 2015, 46 (03) :611-619
[2]   A new record of blue-spotted seabream Pagrus caeruleostictus from Chinese coastal waters documented from morphology and DNA barcoding [J].
Chen Yongxia ;
Liu Jing ;
Wu Renxie .
CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY, 2015, 33 (02) :500-505
[3]   中国鲷科鱼类骨骼系统比较及属种间分类地位探讨 [J].
陈咏霞 ;
刘静 ;
刘龙 .
水产学报, 2014, 38 (09) :1360-1374
[4]  
16S rRNA is a better choice than COI for DNA barcoding hydrozoans in the coastal waters of China[J]. ZHENG Lianming,HE Jinru,LIN Yuanshao,CAO Wenqing,ZHANG Wenjing.Acta Oceanologica Sinica. 2014(04)
[5]   中国犁齿鲷属鱼类一新种(鲈形目,鲷科) [J].
管哲成 ;
唐文乔 ;
伍汉霖 .
动物分类学报, 2012, 37 (01) :217-221
[6]   高鳍带鱼遗传变异及与近缘种间的系统进化关系 [J].
吴仁协 ;
郭刘军 ;
刘静 .
动物分类学报, 2011, 36 (03) :648-655
[7]   中国鲷科鱼类分类和系统发育研究进展 [J].
樊冀蓉 ;
吴仁协 ;
赵元莙 ;
刘静 .
中国水产科学, 2011, 18 (02) :472-480
[8]   舟山海域4种鲷科鱼类线粒体Cyt b基因全序列克隆分析 [J].
徐田军 ;
王日昕 ;
王健鑫 .
南方水产, 2010, 6 (01) :30-36
[9]   应用细胞色素b序列对鲷科鱼类进行种类鉴定的可行性研究 [J].
夏军红 .
南方水产, 2007, (01) :37-43
[10]   用RAPD技术探讨5种鲷科鱼类的亲缘关系 [J].
杨慧荣 ;
江世贵 .
水产学报, 2006, (04) :469-474