Deciphering the family of ankyrin repeat-containing proteins of Plasmodium falciparum: a structural and functional perspective

被引:0
作者
Kumari, Poonam [1 ,2 ]
Gautam, Avinash Kumar [3 ]
Islam, Md. Muzahidul [1 ]
Junaid, Iqbal Taliy [1 ]
Khan, Zainab [1 ]
Mohmmed, Asif [1 ]
Gourinath, Samudrala [3 ]
Malhotra, Pawan [1 ]
机构
[1] Int Ctr Genet Engn & Biotechnol, Aruna Asaf Ali Marg, New Delhi 110067, India
[2] Amity Univ, Amity Inst Biotechnol AIB, Kant Kalwar,NH-11C, Jaipur 303002, Rajasthan, India
[3] Jawaharlal Nehru Univ, New Delhi, India
关键词
ankyrin; host-pathogen interaction; Plasmodium; protein-protein interaction; structure-function; X-ray crystallography; CRYSTAL-STRUCTURE; INVASION; DOMAIN; INHIBITION; DIVERSITY; ALIGNMENT; HOMOLOGY; GENES;
D O I
10.1111/febs.70178
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The invasion of host erythrocytes by Plasmodium falciparum is a fundamental step in its pathogenesis, relying on precisely regulated, transient interactions between parasite proteins and the host erythrocytes. Approximately 20% of eukaryotic proteins contain tandem repeat regions that majorly facilitate protein-protein interactions, with ankyrin (ANK) repeats being the most frequent, and are associated with various diseases. Despite significant advancements in understanding the importance of ANK repeats across various organisms, their roles within the phylum Apicomplexa, including P. falciparum, remain largely unexplored. This study focuses on the significance of ANK repeat proteins in P. falciparum growth and pathogenesis. Here, using in silico approaches, we deciphered the ANK repeat protein family in P. falciparum and elucidated the crystal structure of one of its members, PfANK_1. Co-immunoprecipitation assays revealed several potential interacting partners of PfANK_1, showing its involvement in the functioning of the PfClag9-PfRhopH complex. The stability and interactions of PfANK_1 within the complex were confirmed through multiple approaches, such as bio-layer interferometry (BLI), co-localization studies, and molecular dynamic simulations. Given the crucial role of the PfClag9-PfRhopH complex in erythrocyte invasion, PfANK_1 presents a promising druggable target. The structural analysis uncovered the binding interface and key interacting residues of PfANK_1 with the components of the PfClag9-PfRhopH complex. The work thus provides the first molecular and structural characterization of an ANK repeat protein in P. falciparum, offering new insights into the role of these proteins in the parasite life cycle and providing a potential platform for structure-function relationship-guided drug discovery.
引用
收藏
页数:19
相关论文
共 62 条
[1]   Functional diversity of ankyrin repeats in microbial proteins [J].
Al-Khodor, Souhaila ;
Price, Christopher T. ;
Kalia, Awdhesh ;
Abu Kwaik, Yousef .
TRENDS IN MICROBIOLOGY, 2010, 18 (03) :132-139
[2]   Homology-based method for identification of protein repeats using statistical significance estimates [J].
Andrade, MA ;
Ponting, CP ;
Gibson, TJ ;
Bork, P .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 298 (03) :521-537
[3]   Folding landscapes of ankyrin repeat proteins: experiments meet theory [J].
Barrick, Doug ;
Ferreiro, Diego U. ;
Komives, Elizabeth A. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2008, 18 (01) :27-34
[4]  
Battle G., 2016, Chemistry, DOI [10.6019/TOL.PDBeP-t.2014.00001.1, DOI 10.6019/TOL.PDBEP]
[5]   Ankyrin repeat-containing proteins in Arabidopsis:: characterization of a novel and abundant group of genes coding ankyrin-transmembrane proteins [J].
Becerra, C ;
Jahrmann, T ;
Puigdomènech, P ;
Vicient, CM .
GENE, 2004, 340 (01) :111-121
[6]   Proteomics and integrative omic approaches for understanding host-pathogen interactions and infectious diseases [J].
Beltran, Pierre M. Jean ;
Federspiel, Joel D. ;
Sheng, Xinlei ;
Cristea, Ileana M. .
MOLECULAR SYSTEMS BIOLOGY, 2017, 13 (03)
[7]   High-affinity binders selected from designed ankyrin repeat protein libraries [J].
Binz, HK ;
Amstutz, P ;
Kohl, A ;
Stumpp, MT ;
Briand, C ;
Forrer, P ;
Grütter, MG ;
Plückthun, A .
NATURE BIOTECHNOLOGY, 2004, 22 (05) :575-582
[8]   The InterPro protein families and domains database: 20 years on [J].
Blum, Matthias ;
Chang, Hsin-Yu ;
Chuguransky, Sara ;
Grego, Tiago ;
Kandasaamy, Swaathi ;
Mitchell, Alex ;
Nuka, Gift ;
Paysan-Lafosse, Typhaine ;
Qureshi, Matloob ;
Raj, Shriya ;
Richardson, Lorna ;
Salazar, Gustavo A. ;
Williams, Lowri ;
Bork, Peer ;
Bridge, Alan ;
Gough, Julian ;
Haft, Daniel H. ;
Letunic, Ivica ;
Marchler-Bauer, Aron ;
Mi, Huaiyu ;
Natale, Darren A. ;
Necci, Marco ;
Orengo, Christine A. ;
Pandurangan, Arun P. ;
Rivoire, Catherine ;
Sigrist, Christian J. A. ;
Sillitoe, Ian ;
Thanki, Narmada ;
Thomas, Paul D. ;
Tosatto, Silvio C. E. ;
Wu, Cathy H. ;
Bateman, Alex ;
Finn, Robert D. .
NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D344-D354
[9]  
Bowers K. J., 2006, P 2006 ACMIEEE C SUP, P84
[10]   SIMILARITY BETWEEN CELL-CYCLE GENES OF BUDDING YEAST AND FISSION YEAST AND THE NOTCH GENE OF DROSOPHILA [J].
BREEDEN, L ;
NASMYTH, K .
NATURE, 1987, 329 (6140) :651-654