Selfish mutations promote age-associated erosion of mtDNA integrity in mammals

被引:0
作者
Korotkevich, Ekaterina [1 ]
Conrad, Daniel N. [2 ]
Gartner, Zev J. [2 ]
O'Farrell, Patrick H. [1 ]
机构
[1] Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94115 USA
[2] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA USA
关键词
MITOCHONDRIAL-DNA MUTATIONS; POINT MUTATIONS; CELLS; HETEROPLASMY; DROSOPHILA; SELECTION; NUCLEAR; TISSUES; MICE;
D O I
10.1038/s41467-025-60477-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Mutations in mitochondrial DNA (mtDNA) accumulate during aging and contribute to age-related conditions. High mtDNA copy number masks newly emerged recessive mutations; however, phenotypes develop when cellular levels of a mutant mtDNA rise above a critical threshold. The process driving this increase is unknown. Single-cell DNA sequencing of mouse and human hepatocytes detected increases in abundance of mutant alleles in sequences governing mtDNA replication. These alleles provided a replication advantage (drive) leading to accumulation of the affected genome along with a wide variety of associated passenger mutations, some of which are detrimental. The most prevalent human mtDNA disease variant, the 3243A>G allele, behaved as a driver, suggesting that drive underlies prevalence. We conclude that replicative drive amplifies linked mtDNA mutations to a threshold at which phenotypes are seen thereby promoting age-associated erosion of the mtDNA and influencing the transmission and progression of mitochondrial diseases.
引用
收藏
页数:14
相关论文
共 63 条
[31]   Circos: An information aesthetic for comparative genomics [J].
Krzywinski, Martin ;
Schein, Jacqueline ;
Birol, Inanc ;
Connors, Joseph ;
Gascoyne, Randy ;
Horsman, Doug ;
Jones, Steven J. ;
Marra, Marco A. .
GENOME RESEARCH, 2009, 19 (09) :1639-1645
[32]   Mitochondrial DNA mutations, oxidative stress, and apoptosis in mammalian aging [J].
Kujoth, GC ;
Hiona, A ;
Pugh, TD ;
Someya, S ;
Panzer, K ;
Wohlgemuth, SE ;
Hofer, T ;
Seo, AY ;
Sullivan, R ;
Jobling, WA ;
Morrow, JD ;
Van Remmen, H ;
Sedivy, JM ;
Yamasoba, T ;
Tanokura, M ;
Weindruch, R ;
Leeuwenburgh, C ;
Prolla, TA .
SCIENCE, 2005, 309 (5733) :481-484
[33]   Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells [J].
Lareau, Caleb A. ;
Dubois, Sonia M. ;
Buquicchio, Frank A. ;
Hsieh, Yu-Hsin ;
Garg, Kopal ;
Kautz, Pauline ;
Nitsch, Lena ;
Praktiknjo, Samantha D. ;
Maschmeyer, Patrick ;
Verboon, Jeffrey M. ;
Gutierrez, Jacob C. ;
Yin, Yajie ;
Fiskin, Evgenij ;
Luo, Wendy ;
Mimitou, Eleni P. ;
Muus, Christoph ;
Malhotra, Rhea ;
Parikh, Sumit ;
Fleming, Mark D. ;
Oevermann, Lena ;
Schulte, Johannes ;
Eckert, Cornelia ;
Kundaje, Anshul ;
Smibert, Peter ;
Vardhana, Santosha A. ;
Satpathy, Ansuman T. ;
Regev, Aviv ;
Sankaran, Vijay G. ;
Agarwal, Suneet ;
Ludwig, Leif S. .
NATURE GENETICS, 2023, 55 (07) :1198-+
[34]   Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling [J].
Lareau, Caleb A. ;
Ludwig, Leif S. ;
Muus, Christoph ;
Gohil, Satyen H. ;
Zhao, Tongtong ;
Chiang, Zachary ;
Pelka, Karin ;
Verboon, Jeffrey M. ;
Luo, Wendy ;
Christian, Elena ;
Rosebrock, Daniel ;
Getz, Gad ;
Boland, Genevieve M. ;
Chen, Fei ;
Buenrostro, Jason D. ;
Hacohen, Nir ;
Wu, Catherine J. ;
Aryee, Martin J. ;
Regev, Aviv ;
Sankaran, Vijay G. .
NATURE BIOTECHNOLOGY, 2021, 39 (04) :451-461
[35]  
Li H., 2013, Aligning sequence reads, DOI 10.48550/arXiv.1303.3997
[36]   Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations [J].
Li, Mingkun ;
Schroeder, Roland ;
Ni, Shengyu ;
Madea, Burkhard ;
Stoneking, Mark .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (08) :2491-2496
[37]   Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics [J].
Ludwig, Leif S. ;
Lareau, Caleb A. ;
Ulirsch, Jacob C. ;
Christian, Elena ;
Muus, Christoph ;
Li, Lauren H. ;
Pelka, Karin ;
Ge, Will ;
Oren, Yaara ;
Brack, Alison ;
Law, Travis ;
Rodman, Christopher ;
Chen, Jonathan H. ;
Boland, Genevieve M. ;
Hacohen, Nir ;
Rozenblatt-Rosen, Orit ;
Aryee, Martin J. ;
Buenrostro, Jason D. ;
Regev, Aviv ;
Sankaran, Vijay G. .
CELL, 2019, 176 (06) :1325-+
[38]   Selfish drive can trump function when animal mitochondrial genomes compete [J].
Ma, Hansong ;
O'Farrell, Patrick H. .
NATURE GENETICS, 2016, 48 (07) :798-+
[39]   MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices [J].
McGinnistm, Christopher S. ;
Patterson, David M. ;
Winkler, Juliane ;
Conrad, Daniel N. ;
Hein, Marco Y. ;
Srivastava, Vasudha ;
Hu, Jennifer L. ;
Murrow, Lyndsay M. ;
Weissman, Jonathan S. ;
Werb, Zena ;
Chow, Eric D. ;
Gartner, Zev J. .
NATURE METHODS, 2019, 16 (07) :619-+
[40]   Mechanisms of human mitochondrial DNA maintenance: The determining role of primary sequence and length over function [J].
Moraes, CT ;
Kenyon, L ;
Hao, HL .
MOLECULAR BIOLOGY OF THE CELL, 1999, 10 (10) :3345-3356