Self-assembly of patterns in the abstract tile assembly model

被引:0
作者
Drake, Phillip [1 ]
Patitz, Matthew J. [1 ]
Summers, Scott M. [2 ]
Tracy, Tyler [1 ]
机构
[1] Univ Arkansas, Elect Engn & Comp Sci Dept, Fayetteville, AR 72701 USA
[2] Univ Arkansas, Comp Sci Dept, Oshkosh, WI 54901 USA
关键词
Algorithmic self-assembly; Abstract tile assembly model; Pattern formation; DNA; COMPLEXITY;
D O I
10.1007/s11047-025-10035-8
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
In the abstract Tile Assembly Model, self-assembling systems consisting of tiles of different colors can form structures on which colored patterns are "painted." We explore the complexity, in terms of the numbers of unique tile types required, of assembling various patterns. We first demonstrate how to efficiently self-assemble a set of simple patterns, then show tight bounds on the tile type complexity of self-assembling multi-colored patterns on the surfaces of square assemblies. Finally, we demonstrate an exponential gap in tile type complexity of self-assembling an infinite series of patterns between systems restricted to one plane versus those allowed two planes. This paper is an expansion over a version in the proceedings of the 21st International Conference on Unconventional Computation and Natural Computation (UCNC 2024), with several improved results and full details of all proofs.
引用
收藏
页数:31
相关论文
共 28 条
[1]  
Adleman LeonardM., 2001, STOC 2001 P 33 ANN A, P740
[2]  
Becker F, 2025, P 2025 ANN ACM SIAM, P2387
[3]  
Cannon S., 2013, P 30 INT S THEORETIC, V20, P172
[4]  
Chen HL, 2011, LECT NOTES COMPUT SC, V7074, P445, DOI 10.1007/978-3-642-25591-5_46
[5]  
Czeizler Eugen, 2012, DNA Computing and Molecular Programming. Proceedings 18th International Conference, DNA 18, P58, DOI 10.1007/978-3-642-32208-2_5
[6]  
Doty D, 2023, Leibniz international proceedings in informatics (LIPIcs), V276, DOI [10.4230/LIPIcs.DNA.29.7, DOI 10.4230/LIPICS.DNA.29.7]
[7]  
Drake P, 2024, Pattern self-assembly software
[8]   Self-assembly of Patterns in the Abstract Tile Assembly Model [J].
Drake, Phillip ;
Patitz, Matthew J. ;
Summers, Scott M. ;
Tracy, Tyler .
UNCONVENTIONAL COMPUTATION AND NATURAL COMPUTATION, UCNC 2024, 2024, 14776 :89-103
[9]  
Evans C., 2014, Crystals that count! Physical principles and experimental investigations of DNA tile self-assembly
[10]  
Hader D, 2024, WebTAS: a browser-based simulator