Potential diagnostic and therapeutic gene in chronic low back pain through pyroptosis modulation: A silico study based on the dataset analysis

被引:0
作者
Guo, Jintao [1 ]
Sun, Tao [2 ]
机构
[1] Shandong Univ, Shandong Prov Hosp, Jinan 250100, Peoples R China
[2] Shandong Univ, Shandong Prov Hosp, Dept Pain Management, Jinan 250001, Peoples R China
关键词
ACTIVATION;
D O I
10.1038/s41598-025-06756-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Chronic low back pain (cLBP ) is a common condition that affects the quality of life, can be caused by disc degeneration, facet arthropathy, myofascial pain, sacroiliac joint pain, spondyloarthropathies, and nociplastic pain etc. Research suggests that excessive pyroptosis may trigger cytokine release and harmful inflammation, leading to tissue damage and organ dysfunction, which could be a potential molecular mechanism underlying these conditions. Our aim in this research was to look into the effects of genes associated with pyroptosis in cLBP, with the goal of describing possible markers for diagnosis and targets for treatment. A comprehensive analysis of Differentially Expressed Genes (DEGs) was performed utilizing the GSE177034 datasets sourced from the Gene Expression Omnibus (GEO) repository. GSE177034 included 98 patients admitted to the hospital for treatment of low back pain, all of whom had peripheral blood extracted and sequenced. We identified 883 DEGs, including 397 upregulated and 486 downregulated genes, in cLBP. The WGCNA revealed 11 co-expression modules, with the blue module presenting the utmost positive connection to pyroptosis. The GO and KEGG analyses showed that DEGs associated with pyroptosis were substantially enriched in pathways like the NF-kappaB transcription factor activity and the MyD88-dependent signaling pathway of Toll-like receptors. Machine learning approaches identified five pyroptosis relate hub genes (AVIL, PADI4, ARHGAP24, ST3GAL6, and BICDL2) as potential biomarkers. The cLBP diagnostic column chart model was established, demonstrating the accuracy of hub genes as biomarkers. A hub mRNA-related interaction network was constructed to identify potential therapeutic drugs, followed by verification of hub gene expression levels to validate their role in cLBP. Moreover, the investigation into immune cell infiltration revealed substantial disparities in the presence of five distinct immune cell types between the chronic LBP and acute LBP cohorts. Specifically, activated effector memory CD8 T cells (R = - 0.5407, p-value < 0.001) ,and CD56bright natural killer cells (R = - 0.5438, p-value < 0.001) were all found to be significantly different. These findings suggest that immune involvement may play a role in the development of cLBP. This study identified diagnostic biomarkers and therapeutic targets for cLBP, offering promising avenues for improved diagnosis and treatment. The identification of specific biomarkers, including AVIL, PADI4, ARHGAP24, ST3GAL6, and BICDL2, enhances diagnostic precision by enabling the stratification of cLBP subtypes based on underlying pathophysiology.
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页数:18
相关论文
共 48 条
[1]   Chronic low back pain [J].
Alleva, Joseph ;
Hudgins, Thomas ;
Belous, Julia ;
Origenes, Andrea Kristin .
DM DISEASE-A-MONTH, 2016, 62 (09) :330-333
[2]  
[Anonymous], **DATA OBJECT**, DOI [10.1038/nri3452, 10.1038/s41420-021-00451-x, 10.1016/j.jsb.2017.08.001, 10.1038/s41568-019-0123-y, 10.1038/s41419-019-1883-8, 10.1111/imr.12296]
[3]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[4]   Gene Ontology Consortium: going forward [J].
Blake, J. A. ;
Christie, K. R. ;
Dolan, M. E. ;
Drabkin, H. J. ;
Hill, D. P. ;
Ni, L. ;
Sitnikov, D. ;
Burgess, S. ;
Buza, T. ;
Gresham, C. ;
McCarthy, F. ;
Pillai, L. ;
Wang, H. ;
Carbon, S. ;
Dietze, H. ;
Lewis, S. E. ;
Mungall, C. J. ;
Munoz-Torres, M. C. ;
Feuermann, M. ;
Gaudet, P. ;
Basu, S. ;
Chisholm, R. L. ;
Dodson, R. J. ;
Fey, P. ;
Mi, H. ;
Thomas, P. D. ;
Muruganujan, A. ;
Poudel, S. ;
Hu, J. C. ;
Aleksander, S. A. ;
McIntosh, B. K. ;
Renfro, D. P. ;
Siegele, D. A. ;
Attrill, H. ;
Brown, N. H. ;
Tweedie, S. ;
Lomax, J. ;
Osumi-Sutherland, D. ;
Parkinson, H. ;
Roncaglia, P. ;
Lovering, R. C. ;
Talmud, P. J. ;
Humphries, S. E. ;
Denny, P. ;
Campbell, N. H. ;
Foulger, R. E. ;
Chibucos, M. C. ;
Giglio, M. Gwinn ;
Chang, H. Y. ;
Finn, R. .
NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D1049-D1056
[5]   The Role of the Bone Morphogenetic Protein Antagonist Noggin in Nucleus Pulposus Intervertebral Disc Cells [J].
Chen, Shuimu ;
Bigdon, Sebastian ;
Riether, Carsten ;
Ma, Xiaochi ;
Niu, Xiaoyi ;
Hackel, Sonja ;
Li, Zhen ;
Gantenbein, Benjamin .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (21)
[6]   BRD9 Inhibition Attenuates Matrix Degradation and Pyroptosis in Nucleus Pulposus by Modulating the NOX1/ROS/NF-κB axis [J].
Deng, Zhihuai ;
Zhang, Yangyang ;
Zhu, Yuanxin ;
Zhu, Jianxiong ;
Li, Shuangxing ;
Huang, Zhengqi ;
Qin, Tianyu ;
Wu, Jiajun ;
Zhang, Chao ;
Chen, Weijian ;
Huang, Dongsheng ;
Ye, Wei .
INFLAMMATION, 2023, 46 (03) :1002-1021
[7]   The effects of long-term opioid treatment on the immune system in chronic non-cancer pain patients: A systematic review [J].
Diasso, Pernille D. K. ;
Birke, Hanne ;
Nielsen, Susanne D. ;
Main, Katharina M. ;
Hojsted, Jette ;
Sjogren, Per ;
Kurita, Geana P. .
EUROPEAN JOURNAL OF PAIN, 2020, 24 (03) :481-496
[8]   Brain-Derived Neurotrophic Factor and Immune Cells in Osteoarthritis, Chronic Low Back Pain, and Chronic Widespread Pain Patients: Association with Anxiety and Depression [J].
Dimmek, Dominique Josephine ;
Korallus, Christoph ;
Buyny, Sabine ;
Christoph, Gutenbrunner ;
Lichtinghagen, Ralf ;
Jacobs, Roland ;
Nugraha, Boya .
MEDICINA-LITHUANIA, 2021, 57 (04)
[9]   Pyroptosis and Intervertebral Disc Degeneration: Mechanistic Insights and Therapeutic Implications [J].
Ge, Yuying ;
Chen, Yuying ;
Guo, Chijiao ;
Luo, Huan ;
Fu, Fangda ;
Ji, Weifeng ;
Wu, Chengliang ;
Ruan, Hongfeng .
JOURNAL OF INFLAMMATION RESEARCH, 2022, 15 :5857-5871
[10]   The Neuroimmunology of Chronic Pain: From Rodents to Humans [J].
Grace, Peter M. ;
Tawfik, Vivianne L. ;
Svensson, Camilla, I ;
Burton, Michael D. ;
Loggia, Marco L. ;
Hutchinson, Mark R. .
JOURNAL OF NEUROSCIENCE, 2021, 41 (05) :855-865