Gravity-driven Microfluidic Chip Based on RPA-CRISPR/Cas12a for the Rapid Detection of Mycobacterium tuberculosis

被引:0
作者
Gao, Chang [1 ]
Zhuang, Tian-Chi [2 ]
Li, Ning [3 ]
Liu, Yun [4 ]
Gu, Peng-Fei [1 ]
Zhao, Xin-Yi [5 ]
Ji, Ming-Hui [2 ]
机构
[1] Second Clinical Medical College, Nanjing Medical University, Nanjing
[2] School of Nursing, Nanjing Medical University, Nanjing
[3] Jiangning District Center for Disease Control and Prevention, Nanjing
[4] Qinhuai District Center for Disease Control and Prevention, Nanjing
[5] First Clinical Medical College, Nanjing Medical University, Nanjing
关键词
CRISPR/Cas12a; microfluidics chip; Mycobacterium tuberculosis; rapid detection; RPA;
D O I
10.13560/j.cnki.biotech.bull.1985.2024-0955
中图分类号
学科分类号
摘要
【Objective】 To develop a rapid and efficient method for detecting Mycobacterium tuberculosis (MTB), providing a technical solution for rapid screening of tuberculosis (TB) in grassroots units and remote areas, thereby enhancing TB prevention and control efforts. 【Method】 RPA (recombinase polymerase amplification) primers and crRNA were designed, and a gravity-driven microfluidic chip was introduced to establish an RPA-CRISPR/Cas12a on-chip detection method. The sensitivity and specificity of this method were further analyzed using samples from suspected TB patients for on-chip detection and sputum culture, comparing the established method with the sputum culture method for consistency. 【Result】 The established RPA-CRISPR/Cas12a on-chip detection method achieves MTB detection within 30 min, with a limit of detection (LOD) of 1 copy/μL. Using sputum culture identification as a reference standard, the on-chip detection method demonstrated a sensitivity of 91.11%, specificity of 94.34%, positive predictive value of 93.19%, negative predictive value of 92.59%, and accuracy of 92.86%, with a Kappa value of 0.856.【Conclusion】The developed RPA-CRISPR/Cas12a on-chip detection method presents high sensitivity and specificity, characterized by rapid, simple, and convenient. © 2025 The Editorial Office of Biotechnology Bulletin. All rights reserved.
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页码:62 / 69
页数:7
相关论文
共 33 条
[1]  
Xiao J, Li JQ, Quan ST, Et al., Development and preliminary assessment of a CRISPR-Cas12a-based multiplex detection of Mycobacterium tuberculosis complex [J], Front Bioeng Biotechnol, 11, (2023)
[2]  
Global tuberculosis report 2021 [R], (2021)
[3]  
Global tuberculosis report 2023 [R], (2023)
[4]  
Zhang D, Yu F, Han DS, Et al., ddPCR provides a sensitive test compared with GeneXpert MTB/RIF and mNGS for suspected Mycobacterium tuberculosis infection [J], Front Cell Infect Microbiol, 13, (2023)
[5]  
Chen YJ, Zhu YY, Wang XF, Et al., Gravity-driven and rotation-controlled microfluidic chip for point-of-care nucleic acid detection in the fully closed environment, Talanta, 267, (2024)
[6]  
Mosquera-Restrepo SF, Zuberogoitia S, Gouxette L, Et al., A Mycobacterium tuberculosis fingerprint in human breath allows tuberculosis detection, Nat Commun, 13, 1, (2022)
[7]  
Marechal A, Zou LE., RPA-coated single-stranded DNA as a platform for post-translational modifications in the DNA damage response, Cell Res, 25, 1, pp. 9-23, (2015)
[8]  
Pike AM, Friend CM, Bell SP., Distinct RPA functions promote eukaryotic DNA replication initiation and elongation, Nucleic Acids Res, 51, 19, pp. 10506-10518, (2023)
[9]  
Hefel A, Honda M, Cronin N, Et al., RPA complexes in Caenorhabditis elegans meiosis
[10]  
unique roles in replication, meiotic recombination and apoptosis, Nucleic Acids Res, 49, 4, pp. 2005-2026, (2021)