Functional Screen of Wilson Disease ATP7B Variants Reveals Residual Transport Activities

被引:0
作者
Calvo, Jenifer S. [1 ]
Heger, Tomas [2 ]
Kabin, Ekaterina [1 ]
Mowrey, William R. [3 ]
Del Angel, Guillermo [3 ]
Ding, Wei [3 ]
Lutsenko, Svetlana [1 ]
机构
[1] Johns Hopkins Med Inst, Dept Physiol, Baltimore, MD 21287 USA
[2] Aarhus Univ, Danish Res Inst Translat Neurosci DANDRITE, Dept Mol Biol & Genet, Nord EMBL Partnership Mol Med, Aarhus, Denmark
[3] Alexion, AstraZeneca Rare Dis, Boston, MA 02210 USA
基金
美国国家卫生研究院;
关键词
ATP7B; copper; mutations; variants; Wilson disease; HUMAN COPPER TRANSPORTER; ATPASE ATP7B; MISSENSE MUTATIONS; SEQUENCE VARIATION; BINDING DOMAIN; PROTEIN; GENE; MENKES; TRAFFICKING; RETENTION;
D O I
10.1155/humu/7485658
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Wilson disease is a disorder of copper (Cu) homeostasis caused by the malfunction of Cu transporter ATP7B and associated Cu accumulation in tissues. The existence of over 700 disease-associated variants in the ATP7B gene and a broad spectrum of disease manifestations complicate the analysis of genotype-phenotype correlations and the development of better treatments for this disorder. To assist such studies, we screen 101 variants of ATP7B for expression and Cu transport activity in human fibroblasts lacking active ATP-dependent Cu transporters. The ClinVar database classified 59 of these as variants of uncertain significance or having conflicting pathogenicity classifications; six variants were not in the database. Thirty-three of the variants have been previously characterized by other assays. Only three variants (S657R, G1061E, and G1266R) resulted in the complete inactivation of Cu transport. The in silico analysis of these mutants was used to rationalize this drastic effect on ATP7B activity. The remaining ATP7B variants showed a range of Cu transport activities. Coexpression of variants with different properties yielded activity values different from the simple average. The advantages and limitations of this functional screen are discussed.
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共 76 条
[1]   Accurate structure prediction of biomolecular interactions with AlphaFold 3 [J].
Abramson, Josh ;
Adler, Jonas ;
Dunger, Jack ;
Evans, Richard ;
Green, Tim ;
Pritzel, Alexander ;
Ronneberger, Olaf ;
Willmore, Lindsay ;
Ballard, Andrew J. ;
Bambrick, Joshua ;
Bodenstein, Sebastian W. ;
Evans, David A. ;
Hung, Chia-Chun ;
O'Neill, Michael ;
Reiman, David ;
Tunyasuvunakool, Kathryn ;
Wu, Zachary ;
Zemgulyte, Akvile ;
Arvaniti, Eirini ;
Beattie, Charles ;
Bertolli, Ottavia ;
Bridgland, Alex ;
Cherepanov, Alexey ;
Congreve, Miles ;
Cowen-Rivers, Alexander I. ;
Cowie, Andrew ;
Figurnov, Michael ;
Fuchs, Fabian B. ;
Gladman, Hannah ;
Jain, Rishub ;
Khan, Yousuf A. ;
Low, Caroline M. R. ;
Perlin, Kuba ;
Potapenko, Anna ;
Savy, Pascal ;
Singh, Sukhdeep ;
Stecula, Adrian ;
Thillaisundaram, Ashok ;
Tong, Catherine ;
Yakneen, Sergei ;
Zhong, Ellen D. ;
Zielinski, Michal ;
Zidek, Augustin ;
Bapst, Victor ;
Kohli, Pushmeet ;
Jaderberg, Max ;
Hassabis, Demis ;
Jumper, John M. .
NATURE, 2024, 630 (8016) :493-500
[2]   The six metal binding domains in human copper transporter, ATP7B: molecular biophysics and disease-causing mutations [J].
Arioz, Candan ;
Li, Yaozong ;
Wittung-Stafshede, Pernilla .
BIOMETALS, 2017, 30 (06) :823-840
[3]   Solution Structures of the Actuator Domain of ATP7A and ATP7B, the Menkes and Wilson Disease Proteins [J].
Banci, Lucia ;
Bertini, Ivano ;
Cantini, Francesca ;
Migliardi, Manuele ;
Natile, Giovanni ;
Nushi, Fiorentin ;
Rosato, Antonio .
BIOCHEMISTRY, 2009, 48 (33) :7849-7855
[4]   An NMR Study of the Interaction of the N-terminal Cytoplasmic Tail of the Wilson Disease Protein with Copper(I)-HAH1 [J].
Banci, Lucia ;
Bertini, Ivano ;
Cantini, Francesca ;
Massagni, Chiara ;
Migliardi, Manuele ;
Rosato, Antonio .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (14) :9354-9360
[5]   Structure of the Wilson disease copper transporter ATP7B [J].
Bitter, Ryan M. ;
Oh, SeCheol ;
Deng, Zengqin ;
Rahman, Suhaila ;
Hite, Richard K. ;
Yuan, Peng .
SCIENCE ADVANCES, 2022, 8 (09)
[6]   Critical roles for the COOH terminus of the Cu-ATPase ATP7B in protein stability, trans-Golgi network retention, copper sensing, and retrograde trafficking [J].
Braiterman, L. ;
Nyasae, L. ;
Leves, F. ;
Hubbard, A. L. .
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 2011, 301 (01) :G69-G81
[7]   Apical targeting and Golgi retention signals reside within a 9-amino acid sequence in the copper-ATPase, ATP7B [J].
Braiterman, Lelita ;
Nyasae, Lydia ;
Guo, Yan ;
Bustos, Rodrigo ;
Lutsenko, Svetlana ;
Hubbard, Ann .
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 2009, 296 (02) :G433-G444
[8]   Distinct phenotype of a Wilson disease mutation reveals a novel trafficking determinant in the copper transporter ATP7B [J].
Braiterman, Lelita T. ;
Murthy, Amrutha ;
Jayakanthan, Samuel ;
Nyasae, Lydia ;
Tzeng, Eric ;
Gromadzka, Grazyna ;
Woolf, Thomas B. ;
Lutsenko, Svetlana ;
Hubbard, Ann L. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (14) :E1364-E1373
[9]  
Chang IJ, 2017, HAND CLINIC, V142, P19, DOI 10.1016/B978-0-444-63625-6.00003-3
[10]   Accurate proteome-wide missense variant effect prediction with AlphaMissense [J].
Cheng, Jun ;
Novati, Guido ;
Pan, Joshua ;
Bycroft, Clare ;
Zemgulyte, Akvile ;
Applebaum, Taylor ;
Pritzel, Alexander ;
Wong, Lai Hong ;
Zielinski, Michal ;
Sargeant, Tobias ;
Schneider, Rosalia G. ;
Senior, Andrew W. ;
Jumper, John ;
Hassabis, Demis ;
Kohli, Pushmeet ;
Avsec, Ziga .
SCIENCE, 2023, 381 (6664) :1303-+