Virgifigura deserti gen. nov., sp. nov., isolated from the Gurbantunggut Desert soil

被引:0
作者
Li, Qi [1 ,2 ,3 ]
Peng, Zi-Qi [1 ]
Liu, Wen-Ling [1 ]
Luo, Zhen-Hao [1 ]
Li, Shuai [4 ]
Li, Wen-Jun [1 ,4 ]
Dong, Lei [1 ]
机构
[1] Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangdong Prov Key Lab Plant Stress Biol, Guangzhou, Peoples R China
[2] Sun Yat Sen Univ, Sch Life Sci, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Guangzhou, Peoples R China
[3] Jiaying Univ, Sch Life Sci, Conservat & Utilizat Lab Mt Characterist Resources, Meizhou, Peoples R China
[4] Xinjiang Inst Ecol & Geog, Chinese Acad Sci, State Key Lab Desert & Oasis Ecol, Key Lab Ecol Safety & Sustainable Dev Arid Lands, Urumqi, Peoples R China
基金
中国国家自然科学基金;
关键词
desert soil; Rhodospirillaceae; polyphasic taxonomy; Virgifigura deserti; EMENDED DESCRIPTION; TOOL; CLASSIFICATION; IDENTIFICATION; SUBSTITUTIONS; SEQUENCES; BACTERIA; DATABASE; MEMBER; ACID;
D O I
10.1099/ijsem.0.006771
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-negative, aerobic, rod-shaped bacterial strain, SYSU D60014T, was isolated from a sandy soil sample collected from the Gurbantunggut Desert in Xinjiang, PR China. Colonies of SYSU D60014T were pink-coloured, crystalline, irregular edge with a rough surface. Phylogenetic analyses based on both the 16S rRNA gene and whole-genome sequences assigned strain SYSU D60014T belonged to the family Rhodospirillaceae, formed a distinct lineage and showed 92.5-91.0% similarity to closely related strains. Digital DNA-DNA hybridization, average nucleotide identity and average amino acid identity values between strain SYSU D60014T and members of its related species were 17.2-19.6%, 70.8-74.4%and 48.9-64.5%, respectively. The complete genome of strain SYSU D60014T was 5,100,926 bp with a DNA G+C content of 65.1%. Cells were oxidase-positive and catalase-negative. The strain could grow at 28-40 degrees C (optimum, 37 degrees C), pH 5.0-8.0 (optimum, pH 7.0), and in the presence of up to 3% NaCl (optimum, 1-1.5%, w/v) on R2A. The predominant menaquinone was Q-10. The main polar lipids were phosphatidylethanolamine, phosphatidylmethyl ethanolamine, diphosphatidylglycerol, unidentified aminophospholipid, unidentified aminolipid, unidentified phospholipid, four unidentified polar lipids and two unidentified phosphoglycolipids. Major cellular fatty acids were C19: 0 cyclo omega 8c, summed feature 8 (C18: 1 omega 7c and/or C18:1 omega 6c) and C16:0. Based on the results obtained through genotypic and phenotypic analyses, we propose that strain SYSU D60014T represents a novel species and genus within the family Rhodospirillaceae, for which we propose the name Virgifigura deserti gen. nov., sp. nov. (type strain SYSU D60014T=NBRC 112951T=CPCC 101030T).
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页数:8
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