Distinguishing different proteins based on terahertz spectra by visual geometry group 16 neural network

被引:1
作者
Chen, Yusa [1 ,2 ]
Huang, Xiwen [3 ]
Wu, Meizhang [4 ,5 ]
Hao, Jixuan [3 ]
Cao, Yunhao [1 ,2 ]
Sun, Hongshun [1 ,2 ]
Ma, Lijun [1 ,2 ]
Li, Liye [1 ,2 ]
Wu, Wengang [1 ,2 ]
Zhao, Guozhong [3 ]
Meng, Tianhua [6 ]
机构
[1] Natl Key Lab Adv Micro & Nano Manufacture Technol, Beijing 100871, Peoples R China
[2] Peking Univ, Sch Integrated Circuits, Beijing 100871, Peoples R China
[3] Capital Normal Univ, Dept Phys, Beijing 100048, Peoples R China
[4] Beijing Informat Sci & Technol Univ, Sch Instrument Sci & Optoelect Engn, Beijing 100096, Peoples R China
[5] Univ Sci & Technol Beijing, Sch Automat, Beijing 100083, Peoples R China
[6] Shanxi Datong Univ, Inst Solid State Phys, Shanxi Prov Key Lab Microstruct Electromagnet Func, Datong 037009, Peoples R China
关键词
ENZYME REPLACEMENT THERAPY; FAULT-DIAGNOSIS; EXTRACTION;
D O I
10.1016/j.isci.2025.112148
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Detecting different kinds of proteins is of great significance for medical diagnosis, biological research, and other fields. We combine both terahertz (THz) absorption and refractive index spectra with the visual geometry group 16 (VGG-16) neural network to intelligently identify four proteins, namely albumin, collagen, pepsin, and pancreatin in this study. The THz absorption-refractive index spectra of the proteins were converted to two-dimensional image features by the Grassia angular summation field (GASF) method and used as a dataset, which enabled the VGG-16 model to achieve 98.8% accuracy in distinguishing the four proteins. We also compared the VGG-16 model with other machine learning models, which demonstrate that it has better performance. Overall, the VGG-16 neural network transfer learning technique proposed in this study can quickly and accurately achieve the identification of different kinds of proteins. This research might have potentially important applications in biotechnology fields, such as biosensors, biopharmaceuticals, and medicine.
引用
收藏
页数:14
相关论文
共 61 条
[21]   Tunable metamaterial absorption device based on Fabry -Perot resonance as temperature and refractive index sensing [J].
Li, Wenxin ;
Zhao, Wenchao ;
Cheng, Shubo ;
Zhang, Huafeng ;
Yi, Zho ;
Sun, Tangyou ;
Wu, Pinghui ;
Zeng, Qingdong ;
Raza, Rizwan .
OPTICS AND LASERS IN ENGINEERING, 2024, 181
[22]   Effects of acids, pepsin, bile acids, and trypsin on laryngopharyngeal reflux diseases: physiopathology and therapeutic targets [J].
Li, Yading ;
Xu, Gaofan ;
Zhou, Bingduo ;
Tang, Yishuang ;
Liu, Xiaowen ;
Wu, Yue ;
Wang, Yi ;
Kong, Jing ;
Xu, Tingting ;
He, Cong ;
Zhu, Shengliang ;
Wang, Xiaosu ;
Zhang, Jianning .
EUROPEAN ARCHIVES OF OTO-RHINO-LARYNGOLOGY, 2022, 279 (06) :2743-2752
[23]   Deep learning aided quantitative analysis of anti-tuberculosis fixed-dose combinatorial formulation by terahertz spectroscopy [J].
Liang, Jie ;
Lu, Xingxing ;
Chang, Tianying ;
Cui, Hong-Liang .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2022, 269
[24]   Amino-acid classification based on terahertz absorption spectroscopy with Gaussian process and maximum likelihood [J].
Liao, Junwen ;
Wang, Bo ;
Wang, Zhiguo ;
Zhu, Liguo .
SENSORS AND ACTUATORS B-CHEMICAL, 2023, 388
[25]   Quartz crystal microbalance-based biosensors as rapid diagnostic devices for infectious diseases [J].
Lim, Hui Jean ;
Saha, Tridib ;
Tey, Beng Ti ;
Tan, Wen Siang ;
Ooi, Chien Wei .
BIOSENSORS & BIOELECTRONICS, 2020, 168
[26]   An analytic computation-driven algorithm for Decentralized Multicore Systems [J].
Lin, Yezhi ;
Jin, Xinyuan ;
Chen, Jiuqiang ;
Sodhro, Ali Hassan ;
Pan, Zhifang .
FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2019, 96 :101-110
[27]   Specialty optical fibers for advanced sensing applications [J].
Liu, Huanhuan ;
Hu, Dora Juan Juan ;
Sun, Qizhen ;
Wei, Lei ;
Li, Kaiwei ;
Liao, Changrui ;
Li, Bozhe ;
Zhao, Cong ;
Dong, Xinyong ;
Tang, Yuhan ;
Xiao, Yihong ;
Keiser, Gerd ;
Shum, Perry Ping .
OPTO-ELECTRONIC SCIENCE, 2023, 2 (02)
[28]   Discrimination of Pericarpium Citri Reticulatae in different years using Terahertz Time-Domain spectroscopy combined with convolutional neural network [J].
Liu, Yao ;
Pu, Hongbin ;
Li, Qian ;
Sun, Da-Wen .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2023, 286
[29]   Chemometric Analysis of a Ternary Mixture of Caffeine, Quinic Acid, and Nicotinic Acid by Terahertz Spectroscopy [J].
Loahavilai, Phatham ;
Datta, Sopanant ;
Prasertsuk, Kiattiwut ;
Jintamethasawat, Rungroj ;
Rattanawan, Patharakorn ;
Chia, Jia Yi ;
Kingkan, Cherdsak ;
Thanapirom, Chayut ;
Limpanuparb, Taweetham .
ACS OMEGA, 2022, :35783-35791
[30]   Analysis of proteins and proteomes by mass spectrometry [J].
Mann, M ;
Hendrickson, RC ;
Pandey, A .
ANNUAL REVIEW OF BIOCHEMISTRY, 2001, 70 :437-473