From Tradition to Innovation: Diverse Molecular Techniques in the Fight Against Infectious Diseases

被引:2
作者
Alsharksi, Ahmed Nouri [1 ]
Sirekbasan, Serhat [2 ]
Gurkok-Tan, Tugba [3 ]
Mustapha, Adam [4 ]
机构
[1] Misurata Univ, Fac Med, Dept Microbiol, 93FH 66F, Misurata, Libya
[2] Cankiri Karatekin Univ, Sabanozu Vocat Sch, Dept Med Lab Tech, TR-18650 Cankiri, Turkiye
[3] Cankiri Karatekin Univ, Food & Agr Vocat Sch, Dept Field Crops, TR-18100 Cankiri, Turkiye
[4] Univ Maiduguri, Fac Life Sci, Dept Microbiol, Maiduguri 600104, Nigeria
关键词
infectious diseases; molecular diagnostics; next-generation sequencing (NGS); polymerase chain reaction (PCR); REAL-TIME PCR; ISOTHERMAL AMPLIFICATION LAMP; POLYMERASE-CHAIN-REACTION; CLINICAL MICROBIOLOGY; MYCOBACTERIUM-TUBERCULOSIS; DIAGNOSIS; GENERATION; IDENTIFICATION; MANAGEMENT; COVID-19;
D O I
10.3390/diagnostics14242876
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Infectious diseases impose a significant burden on global health systems due to high morbidity and mortality rates. According to the World Health Organization, millions die from infectious diseases annually, often due to delays in accurate diagnosis. Traditional diagnostic methods in clinical microbiology, primarily culture-based techniques, are time-consuming and may fail with hard-to-culture pathogens. Molecular biology advancements, notably the polymerase chain reaction (PCR), have revolutionized infectious disease diagnostics by allowing rapid and sensitive detection of pathogens' genetic material. PCR has become the gold standard for many infections, particularly highlighted during the COVID-19 pandemic. Following PCR, next-generation sequencing (NGS) has emerged, enabling comprehensive genomic analysis of pathogens, thus facilitating the detection of new strains and antibiotic resistance tracking. Innovative approaches like CRISPR technology are also enhancing diagnostic precision by identifying specific DNA/RNA sequences. However, the implementation of these methods faces challenges, particularly in low- and middle-income countries due to infrastructural and financial constraints. This review will explore the role of molecular diagnostic methods in infectious disease diagnosis, comparing their advantages and limitations, with a focus on PCR and NGS technologies and their future potential.
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页数:24
相关论文
共 156 条
[1]   PAM-flexible Engineered FnCas9 variants for robust and ultra-precise genome editing and diagnostics [J].
Acharya, Sundaram ;
Ansari, Asgar Hussain ;
Das, Prosad Kumar ;
Hirano, Seiichi ;
Aich, Meghali ;
Rauthan, Riya ;
Mahato, Sudipta ;
Maddileti, Savitri ;
Sarkar, Sajal ;
Kumar, Manoj ;
Phutela, Rhythm ;
Gulati, Sneha ;
Rahman, Abdul ;
Goel, Arushi ;
Afzal, C. ;
Paul, Deepanjan ;
Agrawal, Trupti ;
Pulimamidi, Vinay Kumar ;
Jalali, Subhadra ;
Nishimasu, Hiroshi ;
Mariappan, Indumathi ;
Nureki, Osamu ;
Maiti, Souvik ;
Chakraborty, Debojyoti .
NATURE COMMUNICATIONS, 2024, 15 (01)
[2]  
Ahmadzadeh M, 2021, IRAN J PHARM RES, V20, P285, DOI [10.22037/ijpr.2021.115458.15383, 10.22037/IJPR.2021.115458.15383]
[3]   Comparing the significance of the utilization of next generation and third generation sequencing technologies in microbial metagenomics [J].
Akacin, Ilayda ;
Ersoy, Seymanur ;
Doluca, Osman ;
Gungormusler, Mine .
MICROBIOLOGICAL RESEARCH, 2022, 264
[4]   Development of loop-mediated isothermal amplification (LAMP) assays using five primers reduces the false-positive rate in COVID-19 diagnosis [J].
Alhamid, Galyah ;
Tombuloglu, Huseyin ;
Al-Suhaimi, Ebtesam .
SCIENTIFIC REPORTS, 2023, 13 (01)
[5]  
Aliotta JM, 1996, GENET ANAL-BIOMOL E, V12, P185
[6]   DNA Sequencing Sensors: An Overview [J].
Antonio Garrido-Cardenas, Jose ;
Garcia-Maroto, Federico ;
Antonio Alvarez-Bermejo, Jose ;
Manzano-Agugliaro, Francisco .
SENSORS, 2017, 17 (03)
[7]  
Arajo N.P., 2017, Next Gener. Seq. Appl, V4, P147, DOI [10.4172/2469-9853.1000147, DOI 10.4172/2469-9853.1000147]
[8]   Review of Current Methods, Applications, and Data Management for the Bioinformatics Analysis of Whole Exome Sequencing [J].
Bao, Riyue ;
Huang, Lei ;
Andrade, Jorge ;
Tan, Wei ;
Kibbe, Warren A. ;
Jiang, Hongmei ;
Feng, Gang .
CANCER INFORMATICS, 2014, 13 :67-82
[9]  
Bartlett John M S, 2003, Methods Mol Biol, V226, P3
[10]   Comparing Luminex NxTAG-Respiratory Pathogen Panel and RespiFinder-22 for Multiplex Detection of Respiratory Pathogens [J].
Beckmann, Christiane ;
Hirsch, Hans H. .
JOURNAL OF MEDICAL VIROLOGY, 2016, 88 (08) :1319-1324