Hammerhead Ribozymes: Structural Insights, Catalytic Mechanisms, and Cutting-Edge Applications in Synthetic Biology

被引:0
作者
Wang, Liangliang [1 ,2 ]
Liu, Yan [1 ,3 ]
Xian, Xuemin [1 ]
Zhang, Haitao [1 ]
机构
[1] Guangdong Med Univ, Dept Biochem & Mol Biol, Zhanjiang 524023, Peoples R China
[2] Lanzhou Jiaotong Univ, Sch Biol & Pharmaceut Engn, Lanzhou 730070, Peoples R China
[3] Sun Yat Sen Univ, Sch Chem, MOE Key Lab Bioinorgan & Synthet Chem, Guangzhou 510275, Peoples R China
关键词
hammerhead ribozymes; RNA catalysis; gene regulation; antiviral therapy; biosensing; SELF-CLEAVING RIBOZYMES; GENE-EXPRESSION; ACTIVE-SITE; CRYSTAL-STRUCTURE; RNA CATALYSIS; CLEAVAGE; RIBOSWITCHES; SELECTION; REQUIREMENTS; REPLICATION;
D O I
10.3390/ijms26125624
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Hammerhead ribozymes are a class of small RNA molecules with catalytic activity. Their compact size, high catalytic efficiency, structural simplicity, and modular design flexibility make them ideal tools for RNA manipulation and gene regulation. In recent years, these ribozymes have demonstrated tremendous application potential across diverse fields, including gene regulation, disease therapy, and biosensing, significantly advancing related research. This article provides a comprehensive review of recent progress in hammerhead ribozyme research within synthetic biology, thoroughly examines the current challenges, and outlines future development directions, aiming to offer valuable perspectives and insights for their biomedical applications.
引用
收藏
页数:14
相关论文
共 98 条
[1]   A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression [J].
Auslaender, Simon ;
Ketzer, Patrick ;
Hartig, Joerg S. .
MOLECULAR BIOSYSTEMS, 2010, 6 (05) :807-814
[2]   Conditional Control of Mammalian Gene Expression by Tetracycline-Dependent Hammerhead Ribozymes [J].
Beilstein, Kim ;
Wittmann, Alexander ;
Grez, Manuel ;
Suess, Beatrix .
ACS SYNTHETIC BIOLOGY, 2015, 4 (05) :526-534
[3]   Control of alphavirus-based gene expression using engineered riboswitches [J].
Bell, Christie L. ;
Yu, Dong ;
Smolke, Christina D. ;
Geall, Andrew J. ;
Beard, Clayton W. ;
Mason, Peter W. .
VIROLOGY, 2015, 483 :302-311
[4]   The structure, function and application of the hammerhead ribozyme [J].
Birikh, KR ;
Heaton, PA ;
Eckstein, F .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1997, 245 (01) :1-16
[5]   Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme [J].
Boots, Jennifer L. ;
Canny, Marella D. ;
Azimi, Ehsan ;
Pardi, Arthur .
RNA, 2008, 14 (10) :2212-2222
[6]   Elucidating Evolutionary Mechanisms and Variants of the Hammerhead Ribozyme Using In Vitro Selection [J].
Brill, Jake ;
Nurmi, Connor ;
Li, Yingfu .
CHEMBIOCHEM, 2024, 25 (21)
[7]   Efficient ligation of the Schistosoma hammerhead ribozyme [J].
Canny, Marella D. ;
Jucker, Fiona M. ;
Pardi, Arthur .
BIOCHEMISTRY, 2007, 46 (12) :3826-3834
[8]   Fast cleavage kinetics of a natural hammerhead ribozyme [J].
Canny, MD ;
Jucker, FM ;
Kellogg, E ;
Khvorova, A ;
Jayasena, SD ;
Pardi, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (35) :10848-10849
[9]   Divalent Metal Ion Activation of a Guanine General Base in the Hammerhead Ribozyme: Insights from Molecular Simulations [J].
Chen, Haoyuan ;
Giese, Timothy J. ;
Golden, Barbara L. ;
York, Darrin M. .
BIOCHEMISTRY, 2017, 56 (24) :2985-2994
[10]   Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems [J].
Chen, Yvonne Y. ;
Jensen, Michael C. ;
Smolke, Christina D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (19) :8531-8536