Construction of Diagnostic Model for Regulatory T Cell-Related Genes in Sepsis Based on Machine Learning

被引:0
作者
Wang, Xuesong [1 ]
Guo, Zhe [1 ]
Wang, Xinrui [1 ]
Wang, Zhong [1 ]
机构
[1] Tsinghua Univ, Beijing Tsinghua Changgung Hosp, Sch Clin Med, Beijing 100084, Peoples R China
基金
中国博士后科学基金;
关键词
sepsis; regulatory T cells; machine learning; biomarkers; SEPTIC SHOCK; DEFINITIONS; ACTIVATION; PATHWAY;
D O I
10.3390/biomedicines13051060
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Background: Sepsis is a complex syndrome caused by a severe infection that occurs with a severe inflammatory response. Regulatory T cells (Tregs) have immunosuppressive effects and play a crucial role in modulating the immune response. There-fore, the number of Tregs is significantly increased in sepsis patients. Methods and Results: This paper aims to identify Tregs associated with the diagnosis of sepsis. For this purpose, transcriptional data from the GEO database for sepsis and its controls were downloaded and subjected to differential expression analysis. Immuno-infiltration analysis of the obtained DEGs revealed that Tregs were significantly different in sepsis and its controls. To further explore the cellular landscape and interactions in sepsis, single-cell RNA sequencing (scRNA-seq) data were analyzed. We identified key cell types and their interactions, including Tregs, using cell-cell communication analysis tools such as CellChat. This analysis provided in-sights into the dynamic changes in immune cell populations and their communication networks in sepsis. Thus, we utilized multiple machine learning algorithms to screen and extract Treg-related genes associated with sepsis diagnosis. We then performed both in-ternal and external validation tests. The final diagnostic model was constructed with high diagnostic accuracy (accuracy of 0.9615). Furthermore, we verified the diagnostic gene via a qPCR experiment. Conclusions: This paper elucidates the potential diagnostic targets associated with Tregs in sepsis progression and provides comprehensive understanding of the immune cell interactions in sepsis through scRNA-seq analysis.
引用
收藏
页数:15
相关论文
共 43 条
[1]   In silico analysis of missense variants of the C1qA gene related to infection and autoimmune diseases [J].
Behairy, Mohammed Y. ;
Abdelrahman, ALi A. ;
Abdallah, Hoda Y. ;
Ibrahim, Emad El-Deen A. ;
Sayed, Anwar A. ;
Azab, Marwa M. .
JOURNAL OF TAIBAH UNIVERSITY MEDICAL SCIENCES, 2022, 17 (06) :1074-1082
[2]   Targeting the annexin 1-formyl peptide receptor 2/ALX pathway affords protection against bacterial LPS-induced pathologic changes in the murine adrenal cortex [J].
Buss, Nicholas A. P. S. ;
Gavins, Felicity N. E. ;
Cover, Patricia O. ;
Terron, Andrea ;
Buckingham, Julia C. .
FASEB JOURNAL, 2015, 29 (07) :2930-2942
[3]   Review: The Emerging Role of Neutrophil Extracellular Traps in Sepsis and Sepsis-Associated Thrombosis [J].
Chen, Zhaoyuan ;
Zhang, Hao ;
Qu, Mengdi ;
Nan, Ke ;
Cao, Hanzhong ;
Cata, Juan P. ;
Chen, Wankun ;
Miao, Changhong .
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2021, 11
[4]   Machine learning reveals ferroptosis features and a novel ferroptosis classifier in patients with sepsis [J].
Chen, Zhigang ;
Wei, Shiyou ;
Yuan, Zhize ;
Chang, Rui ;
Chen, Xue ;
Fu, Yu ;
Wu, Wei .
IMMUNITY INFLAMMATION AND DISEASE, 2024, 12 (05)
[5]   CAR-T-Cell-Based Cancer Immunotherapies: Potentials, Limitations, and Future Prospects [J].
Choudhery, Mahmood S. ;
Arif, Taqdees ;
Mahmood, Ruhma ;
Harris, David T. .
JOURNAL OF CLINICAL MEDICINE, 2024, 13 (11)
[6]   Revealing potential diagnostic gene biomarkers of septic shock based on machine learning analysis [J].
Fan, Yonghua ;
Han, Qiufeng ;
Li, Jinfeng ;
Ye, Gaige ;
Zhang, Xianjing ;
Xu, Tengxiao ;
Li, Huaqing .
BMC INFECTIOUS DISEASES, 2022, 22 (01)
[7]   Sepsis and Septic Shock - Basics of diagnosis, pathophysiology and clinical decision making [J].
Font, Michael D. ;
Thyagarajan, Braghadheeswar ;
Khanna, Ashish K. .
MEDICAL CLINICS OF NORTH AMERICA, 2020, 104 (04) :573-+
[8]   The dendritic cell response to classic, emerging, and homeostatic danger signals. Implications for autoimmunity [J].
Gallo, Paul M. ;
Gallucci, Stefania .
FRONTIERS IN IMMUNOLOGY, 2013, 4
[9]   Janus face of complement-driven neutrophil activation during sepsis [J].
Halbgebauer, R. ;
Schmidt, C. Q. ;
Karsten, C. M. ;
Ignatius, A. ;
Huber-Lang, M. .
SEMINARS IN IMMUNOLOGY, 2018, 37 (0C) :12-20
[10]   Decoding the potential role of regulatory T cells in sepsis-induced immunosuppression [J].
Huang, Siyuan ;
Liu, Di ;
Han, Lei ;
Deng, Jin ;
Wang, Zhen ;
Jiang, Jianxin ;
Zeng, Ling .
EUROPEAN JOURNAL OF IMMUNOLOGY, 2024, 54 (05)