RRM-TransUNet: Deep-Learning Driven Interactive Model for Precise Pancreas Segmentation in CT Images

被引:0
作者
Wang, Yulan [1 ]
Liu, Weimin [1 ]
Yu, Peng [1 ]
Huang, Xin [2 ]
Pan, Junjun [1 ]
机构
[1] Beihang Univ, State Key Lab Virtual Real Technol & Syst, Beijing, Peoples R China
[2] Peking Univ Third Hosp, Pain Med Ctr, Beijing, Peoples R China
基金
北京市自然科学基金; 国家重点研发计划;
关键词
deep learning; interactive segmentation; medical image; pancreas segmentation; NETWORK;
D O I
10.1002/rcs.70065
中图分类号
R61 [外科手术学];
学科分类号
摘要
BackgroundPancreatic diseases such as cancer and pancreatitis pose significant health risks. Early detection requires precise segmentation results. Fully automatic segmentation algorithms cannot integrate clinical expertise and correct output errors, while interactive methods can offer a better chance for higher accuracy and reliability.MethodsWe proposed a new network-RRM-TransUNet for the interactive pancreas segmentation task in CT images aiming to provide more reliable and precise results. The network incorporates Rotary Position Embedding, Root Mean Square Normalisation, and a Mixture of Experts mechanism. An intuitive interface is constructed for user-aided pancreas segmentation.ResultsRRM-TransUNet achieves outstanding performance on multiple datasets, with a Dice Similarity Coefficient (DSC) of 93.82% and an Average Symmetric Surface Distance error (ASSD) of 1.12 mm on MSD, 93.79%/1.15 mm on AMOS, and 93.68%/1.18 mm on AbdomenCT-1K.ConclusionOur method outperforms previous methods and provides doctors with an efficient and user-friendly interactive pancreas segmentation experience through the intuitive interface.
引用
收藏
页数:11
相关论文
共 38 条
[1]   The Medical Segmentation Decathlon [J].
Antonelli, Michela ;
Reinke, Annika ;
Bakas, Spyridon ;
Farahani, Keyvan ;
Kopp-Schneider, Annette ;
Landman, Bennett A. ;
Litjens, Geert ;
Menze, Bjoern ;
Ronneberger, Olaf ;
Summers, Ronald M. ;
van Ginneken, Bram ;
Bilello, Michel ;
Bilic, Patrick ;
Christ, Patrick F. ;
Do, Richard K. G. ;
Gollub, Marc J. ;
Heckers, Stephan H. ;
Huisman, Henkjan ;
Jarnagin, William R. ;
McHugo, Maureen K. ;
Napel, Sandy ;
Pernicka, Jennifer S. Golia ;
Rhode, Kawal ;
Tobon-Gomez, Catalina ;
Vorontsov, Eugene ;
Meakin, James A. ;
Ourselin, Sebastien ;
Wiesenfarth, Manuel ;
Arbelaez, Pablo ;
Bae, Byeonguk ;
Chen, Sihong ;
Daza, Laura ;
Feng, Jianjiang ;
He, Baochun ;
Isensee, Fabian ;
Ji, Yuanfeng ;
Jia, Fucang ;
Kim, Ildoo ;
Maier-Hein, Klaus ;
Merhof, Dorit ;
Pai, Akshay ;
Park, Beomhee ;
Perslev, Mathias ;
Rezaiifar, Ramin ;
Rippel, Oliver ;
Sarasua, Ignacio ;
Shen, Wei ;
Son, Jaemin ;
Wachinger, Christian ;
Wang, Liansheng .
NATURE COMMUNICATIONS, 2022, 13 (01)
[2]   SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation [J].
Badrinarayanan, Vijay ;
Kendall, Alex ;
Cipolla, Roberto .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2017, 39 (12) :2481-2495
[3]  
Cao Hu, 2023, Computer Vision - ECCV 2022 Workshops: Proceedings. Lecture Notes in Computer Science (13803), P205, DOI 10.1007/978-3-031-25066-8_9
[4]  
Chen J., 2021, arXiv
[5]   FocalClick: Towards Practical Interactive Image Segmentation [J].
Chen, Xi ;
Zhao, Zhiyan ;
Zhang, Yilei ;
Duan, Manni ;
Qi, Donglian ;
Zhao, Hengshuang .
2022 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2022), 2022, :1290-1299
[6]  
Cicek Ozgun, 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016. 19th International Conference. Proceedings: LNCS 9901, P424, DOI 10.1007/978-3-319-46723-8_49
[7]   Long-term expansion, genomic stability and in vivo safety of adult human pancreas organoids [J].
Georgakopoulos, Nikitas ;
Prior, Nicole ;
Angres, Brigitte ;
Mastrogiovanni, Gianmarco ;
Cagan, Alex ;
Harrison, Daisy ;
Hindley, Christopher J. ;
Arnes-Benito, Robert ;
Liau, Siong-Seng ;
Curd, Abbie ;
Ivory, Natasha ;
Simons, Benjamin D. ;
Martincorena, Inigo ;
Wurst, Helmut ;
Saeb-Parsy, Kourosh ;
Huch, Meritxell .
BMC DEVELOPMENTAL BIOLOGY, 2020, 20 (01)
[8]   CE-Net: Context Encoder Network for 2D Medical Image Segmentation [J].
Gu, Zaiwang ;
Cheng, Jun ;
Fu, Huazhu ;
Zhou, Kang ;
Hao, Huaying ;
Zhao, Yitian ;
Zhang, Tianyang ;
Gao, Shenghua ;
Liu, Jiang .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2019, 38 (10) :2281-2292
[9]  
Guotai Wang, 2020, Medical Image Computing and Computer Assisted Intervention - MICCAI 2020. 23rd International Conference. Proceedings. Lecture Notes in Computer Science (LNCS 12264), P279, DOI 10.1007/978-3-030-59719-1_28
[10]   Pancreatic cancer: Advances and challenges [J].
Halbrook, Christopher J. ;
Lyssiotis, Costas A. ;
di Magliano, Marina Pasca ;
Maitra, Anirban .
CELL, 2023, 186 (08) :1729-1754