Genome sequence of Chryseobacterium scophthalmum LGBM4, isolated from a red-backed salamander (Plethodon cinereus) in Rugar Woods, NY, USA

被引：0

作者：

Grossman, Leslie ^{[1
]}

McLaughlin, Brianna ^{[1
]}

Ankrah, Nana Y. D. ^{[2
]}

Garneau, Danielle E. ^{[1
]}

机构：

[1] State Univ New York Plattsburgh, Ctr Earth & Environm Sci, Plattsburgh, NY 12901 USA

[2] State Univ New York Plattsburgh, Biol Sci Dept, Plattsburgh, NY 12901 USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2025年 / 14卷 / 05期

关键词：

Chryseobacterium; amphibian; red-backed salamander; Plethodon cinereus; Chryseobacterium scophthalmum; Plethodon; CHRYSEOBACTERIUM;

D O I：

暂无

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Here we present the complete genome sequence of Chryseobacterium scophthalmum LGBM4 isolated from a red-backed salamander in Rugar Woods, Plattsburgh, NY, USA. The assembled genome comprises a 4.3 Mb chromosome with a guanine-cytosine content of 33.5%. The genome of LGBM4 encodes several antibiotic resistance and heavy metal detoxification genes.

引用

页数：3

共 10 条

[1] Genome sequence of Bacillus pumilus RI06-95 isolated during a Microcystis bloom in lake Champlain, USA [J].

Barkley, Ashley ;

Felix, Kermisha ;

Myers, Luke ;

Ankrah, Nana Y. D. .

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024,

[2] Disruption of skin microbiota contributes to salamander disease [J].

Bletz, Molly C. ;

Kelly, Moira ;

Sabino-Pinto, Joana ;

Bales, Emma ;

Van Praet, Sarah ;

Bert, Wim ;

Boyen, Filip ;

Vences, Miguel ;

Steinfartz, Sebastian ;

Pasmans, Frank ;

Martel, An .

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2018, 285 (1885)

[3] antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation [J].

Blin, Kai ;

Shaw, Simon ;

Augustijn, Hannah E. ;

Reitz, Zachary L. ;

Biermann, Friederike ;

Alanjary, Mohammad ;

Fetter, Artem ;

Terlouw, Barbara R. ;

Metcalf, William W. ;

Helfrich, Eric J. N. ;

van Wezel, Gilles P. ;

Medema, Marnix H. ;

Weber, Tilmann .

NUCLEIC ACIDS RESEARCH, 2023, 51 (W1) :W46-W50

[4] Draft genome sequence of Gordonia sp. ABKF26, a potential petroleum, plastic, and rubber-degrading bacterium, isolated from St. Albans Bay, VT, USA [J].

Felix, Kermisha ;

Barkley, Ashley ;

Myers, Luke ;

Ankrah, Nana Y. D. .

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (11)

[5] Antimicrobial susceptibility and epidemiology of a worldwide collection of Chryseobacterium spp.:: Report from the SENTRY Antimicrobial Surveillance Program (1997-2001) [J].

Kirby, JT ;

Sader, HS ;

Walsh, TR ;

Jones, RN .

JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (01) :445-448

[6] Assembly of long, error-prone reads using repeat graphs [J].

Kolmogorov, Mikhail ;

Yuan, Jeffrey ;

Lin, Yu ;

Pevzner, Pavel A. .

NATURE BIOTECHNOLOGY, 2019, 37 (05) :540-+

[7] Clinical and Microbiological Characteristics of Chryseobacterium indologenes Bacteremia [J].

Lin, Yi-Tsung ;

Jeng, Yuan-Yu ;

Lin, Mei-Lin ;

Yu, Kwok-Woon ;

Wang, Fu-Der ;

Liu, Cheng-Yi .

JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION, 2010, 43 (06) :498-505

[8] CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].

Parks, Donovan H. ;

Imelfort, Michael ;

Skennerton, Connor T. ;

Hugenholtz, Philip ;

Tyson, Gene W. .

GENOME RESEARCH, 2015, 25 (07) :1043-1055

[9] NCBI prokaryotic genome annotation pipeline [J].

Tatusova, Tatiana ;

DiCuccio, Michael ;

Badretdin, Azat ;

Chetvernin, Vyacheslav ;

Nawrocki, Eric P. ;

Zaslavsky, Leonid ;

Lomsadze, Alexandre ;

Pruitt, Kimd. ;

Borodovsky, Mark ;

Ostell, James .

NUCLEIC ACIDS RESEARCH, 2016, 44 (14) :6614-6624

[10]

Vaneechoutte M., 2011, Manual of Clinical Microbiology, V16, P714, DOI [10.1128/9781555817381.ch44, DOI 10.1128/9781555817381.CH44]

← 1 →