Non-uniform sampling reconstruction for symmetrical NMR spectroscopy by exploiting inherent symmetry

被引:0
作者
Lin, Enping [1 ]
Fang, Ze [1 ,2 ]
Huang, Yuqing [1 ]
Yang, Yu [1 ]
Chen, Zhong [1 ,2 ]
机构
[1] Xiamen Univ, Dept Elect Sci, State Key Lab Phys Chem Solid Surfaces, Xiamen 361005, Fujian, Peoples R China
[2] Xiamen Univ, Inst Artificial Intelligence, Xiamen 361102, Peoples R China
基金
中国国家自然科学基金;
关键词
NMR; Symmetry Non-uniform sampling; Compressed sensing; Protein; MAXIMUM-ENTROPY RECONSTRUCTION; 2-DIMENSIONAL NMR; SIGNAL RECOVERY; RESONANCE; OPTIMIZATION; SENSITIVITY; EFFICIENT; ALGORITHM;
D O I
10.1016/j.sigpro.2025.110057
中图分类号
TM [电工技术]; TN [电子技术、通信技术];
学科分类号
0808 ; 0809 ;
摘要
Symmetrical NMR spectroscopy constitutes a vital branch of multidimensional NMR spectroscopy, providing a powerful tool for the structural elucidation of biological macromolecules. Non-Uniform Sampling (NUS) serves as an effective strategy for averting the prohibitive acquisition time of multidimensional NMR spectroscopy by only sampling a few points according to NUS sampling schedules and reconstructing missing points via algorithms. However, current sampling schedules are unable to maintain the accurate recovery of cross peaks that are weak but important. In this work, we propose a novel sampling schedule- SCPG (Symmetrical Copy Poisson Gap) and employ CS (Compressed Sensing) methods for reconstruction. We theoretically prove that the symmetrical constraint, apart from sparsity, is implicitly implemented when SCPG is combined with CS methods. The simulated and experimental data substantiate the advantage of SCPG over state-of-the-art 2D Woven PG in the NUS reconstruction of symmetrical NMR spectroscopy.
引用
收藏
页数:12
相关论文
共 47 条
  • [1] 2D COSY 11B NMR spectroscopy in the interpretation of the structures of iso and trans isomers of the macropolyhedral boron cluster [B20H18]2
    Avdeeva, Varvara V.
    Privalov, Viktor I.
    Kubasov, Alexey S.
    Nikiforova, Svetlana E.
    Malinina, Elena A.
    Kuznetsov, Nikolay T.
    [J]. INORGANICA CHIMICA ACTA, 2023, 555
  • [2] EXPONENTIAL SAMPLING, AN ALTERNATIVE METHOD FOR SAMPLING IN TWO-DIMENSIONAL NMR EXPERIMENTS
    BARNA, JCJ
    LAUE, ED
    MAYGER, MR
    SKILLING, J
    WORRALL, SJP
    [J]. JOURNAL OF MAGNETIC RESONANCE, 1987, 73 (01): : 69 - 77
  • [3] A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems
    Beck, Amir
    Teboulle, Marc
    [J]. SIAM JOURNAL ON IMAGING SCIENCES, 2009, 2 (01): : 183 - 202
  • [4] Covariance nuclear magnetic resonance spectroscopy
    Brüschweiler, R
    Zhang, FL
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (11) : 5253 - 5260
  • [5] NMR data for the hydroxyl groups detected by NOESY spectra in sesquiterpene lactones
    Budzianowski, Jaromir
    Nawrot, Joanna
    Nowak, Gerard
    [J]. DATA IN BRIEF, 2019, 25
  • [6] Robust uncertainty principles:: Exact signal reconstruction from highly incomplete frequency information
    Candès, EJ
    Romberg, J
    Tao, T
    [J]. IEEE TRANSACTIONS ON INFORMATION THEORY, 2006, 52 (02) : 489 - 509
  • [7] The restricted isometry property and its implications for compressed sensing
    Candes, Emmanuel J.
    [J]. COMPTES RENDUS MATHEMATIQUE, 2008, 346 (9-10) : 589 - 592
  • [8] Near-optimal signal recovery from random projections: Universal encoding strategies?
    Candes, Emmanuel J.
    Tao, Terence
    [J]. IEEE TRANSACTIONS ON INFORMATION THEORY, 2006, 52 (12) : 5406 - 5425
  • [9] Stable signal recovery from incomplete and inaccurate measurements
    Candes, Emmanuel J.
    Romberg, Justin K.
    Tao, Terence
    [J]. COMMUNICATIONS ON PURE AND APPLIED MATHEMATICS, 2006, 59 (08) : 1207 - 1223
  • [10] Efficient Maximum Entropy Reconstruction of Nuclear Magnetic Resonance T1-T2 Spectra
    Chouzenoux, Emilie
    Moussaoui, Said
    Idier, Jerome
    Mariette, Francois
    [J]. IEEE TRANSACTIONS ON SIGNAL PROCESSING, 2010, 58 (12) : 6040 - 6051