Population structure and genetic diversity of hairfin anchovy (Setipinna tenuifilis) revealed by microsatellite markers

被引:0
作者
Bingjian Liu [1 ]
Shan Tong [2 ]
Jiasheng Li [1 ]
Xun Jin [2 ]
Sixu Zheng [1 ]
Yunpeng Wang [2 ]
Luxiu Gao [1 ]
Taobo Feng [2 ]
Mingzhe Han [2 ]
Yifan Liu [3 ]
机构
[1] College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan
[2] National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan
[3] National Engineering Research Center for Facilitated Marine Aquaculture, Zhejiang Ocean University, Zhoushan
基金
中国国家自然科学基金;
关键词
genetic diversity; microsatellite; population structure; Setipinna tenuifilis;
D O I
10.1007/s13131-024-2369-9
中图分类号
学科分类号
摘要
Microsatellite markers with polymorphic advantages are widely used in the exploration and utilization of marine fishery resources. In this study, 16 polymorphic microsatellite markers were used to evaluate the diversity and population structure of Setipinna tenuifilis, a nearshore fish of economic and ecological value in the western Pacific Ocean and Indian Ocean. The genetic diversity of S. tenuifilis showed a high level (mean Na (number of alleles) is 23.25, mean Ho (observed heterozygosity) is 0.639, mean Ra (allelic richness) is 11.625, and the polymorphic information content (PIC) is 0.844) similar to other Clupeiformes fish species. The nine wild S. tenuifilis populations showed significant differentiation (FST ranging from 0.003 84 to 0.193 46) and were generally divided into southern and northern populations based on genetic structure, except for the Zhoushan population, which exhibited genetic mixture. Our results provide fundamental but significant genetic insights for the management and conservation of S. tenuifilis fishery resources. © Chinese Society for Oceanography and Springer-Verlag GmbH Germany, part of Springer Nature 2025.
引用
收藏
页码:138 / 146
页数:8
相关论文
共 42 条
[1]  
Arranz J.J., Bayon Y., San Primitivo F., Genetic variation at microsatellite loci in Spanish sheep, Small Ruminant Research, 39, 1, pp. 3-10, (2001)
[2]  
Beaumont M.A., Selection and sticklebacks, Molecular Ecology, 17, 15, pp. 3425-3427, (2008)
[3]  
Beaumont M.A., Balding D.J., Identifying adaptive genetic divergence among populations from genome scans, Molecular Ecology, 13, 4, pp. 969-980, (2004)
[4]  
Cornuet J.M., Luikart G., Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data, Genetics, 144, 4, pp. 2001-2014, (1996)
[5]  
Earl D.A., VonHoldt B.M., STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method, Conservation Genetics Resources, 4, 2, pp. 359-361, (2012)
[6]  
Evanno G., Regnaut S., Goudet J., Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study, Molecular Ecology, 14, 8, pp. 2611-2620, (2005)
[7]  
Excoffier L., Hofer T., Foll M., Detecting loci under selection in a hierarchically structured population, Heredity, 103, 4, pp. 285-298, (2009)
[8]  
Excoffier L., Lischer H.E.L., Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Molecular Ecology Resources, 10, 3, pp. 564-567, (2010)
[9]  
Ferrada-Fuentes S., Galleguillos R., Canales-Aguirre C.B., Et al., Development and characterization of thirty-two microsatellite markers for the anchovy, Engraulis ringens Jenyns, 1842 (Clupeiformes, Engraulidae) via 454 pyrose-quencing, Latin American Journal of Aquatic Research, 46, 2, pp. 452-456, (2018)
[10]  
Foll M., Gaggiotti O., A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective, Genetics, 180, 2, pp. 977-993, (2008)