Identification of M2 macrophage-related genes associated with diffuse large B-cell lymphoma via bioinformatics and machine learning approaches

被引:0
作者
Zhang, Jiayi [1 ]
Jia, Zhixiang [1 ]
Zhang, Jiahui [2 ]
Mu, Xiaohui [1 ]
Ai, Limei [1 ]
机构
[1] Jinzhou Med Univ, Affiliated Hosp 1, Dept Hematol, Jinzhou, Peoples R China
[2] Sanmenxia Vocat & Tech Coll, Med Coll, Sanmenxia, Peoples R China
关键词
Bioinformatics; Diffuse large B-cell lymphoma; M2; macrophages; Immune infiltration; RANDOMIZED CONTROLLED-TRIAL; ELDERLY-PATIENTS; DES-LYMPHOMES; T-CELLS; R-CHOP; RITUXIMAB; CHEMOTHERAPY;
D O I
10.1186/s13062-025-00649-4
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
M2 macrophages play a crucial role in the initiation and progression of various tumors, including diffuse large B-cell lymphoma (DLBCL). However, the characterization of M2 macrophage-related genes in DLBCL remains incomplete. In this study, we downloaded DLBCL-related datasets from the Gene Expression Omnibus (GEO) database and identified 77 differentially expressed genes (DEGs) between the control group and the treat group. We assessed the immune cell infiltration using CIBERSORT analysis and identified modules associated with M2 macrophages through weighted gene co-expression network analysis (WGCNA). Using the Least Absolute Shrinkage and Selection Operator (LASSO), Support Vector Machine Recursive Feature Elimination (SVM-RFE), and Random Forest (RF) algorithms, we screened for seven potential diagnostic biomarkers with strong diagnostic capabilities: SMAD3, IL7R, IL18, FAS, CD5, CCR7, and CSF1R. Subsequently, the constructed logistic regression model and nomogram demonstrated robust predictive performance. We further investigated the expression levels, prognostic values, and biological functions of these biomarkers. The results showed that SMAD3, IL7R, IL18, FAS and CD5 were associated with the survival of DLBCL patients and could be used as markers to predict the prognosis of DLBCL. Our study introduces a novel diagnostic strategy and provides new insights into the potential mechanisms underlying DLBCL. However, further validation of the practical value of these genes in DLBCL diagnosis is warranted before clinical application.
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页数:13
相关论文
共 30 条
[1]   Immune cell constitution in the tumor microenvironment predicts the outcome in diffuse large B-cell lymphoma [J].
Autio, Matias ;
Leivonen, Suvi-Katri ;
Brueck, Oscar ;
Mustjoki, Satu ;
Jorgensen, Judit Meszaros ;
Karjalainen-Lindsberg, Marja-Liisa ;
Beiske, Klaus ;
Holte, Harald ;
Pellinen, Teijo ;
Leppa, Sirpa .
HAEMATOLOGICA, 2021, 106 (03) :718-729
[2]   Immune Escape Mechanisms as a Guide for Cancer Immunotherapy [J].
Beatty, Gregory L. ;
Gladney, Whitney L. .
CLINICAL CANCER RESEARCH, 2015, 21 (04) :687-692
[3]   Understanding the tumor immune microenvironment (TIME) for effective therapy [J].
Binnewies, Mikhail ;
Roberts, Edward W. ;
Kersten, Kelly ;
Chan, Vincent ;
Fearon, Douglas F. ;
Merad, Miriam ;
Coussens, Lisa M. ;
Gabrilovich, Dmitry I. ;
Ostrand-Rosenberg, Suzanne ;
Hedrick, Catherine C. ;
Vonderheide, Robert H. ;
Pittet, Mikael J. ;
Jain, Rakesh K. ;
Zou, Weiping ;
Howcroft, T. Kevin ;
Woodhouse, Elisa C. ;
Weinberg, Robert A. ;
Krummel, Matthew F. .
NATURE MEDICINE, 2018, 24 (05) :541-550
[4]   Diffuse large B-cell lymphoma: R-CHOP failure-what to do? [J].
Coiffier, Bertrand ;
Sarkozy, Clementine .
HEMATOLOGY-AMERICAN SOCIETY OF HEMATOLOGY EDUCATION PROGRAM, 2016, :366-378
[5]   Long-term outcome of patients in the LNH-98.5 trial, the first randomized study comparing rituximab-CHOP to standard CHOP chemotherapy in DLBCL patients: a study by the Groupe d'Etudes des Lymphomes de l'Adulte [J].
Coiffier, Bertrand ;
Thieblemont, Catherine ;
Van Den Neste, Eric ;
Lepeu, Gerard ;
Plantier, Isabelle ;
Castaigne, Sylvie ;
Lefort, Sophie ;
Marit, Gerald ;
Macro, Margaret ;
Sebban, Catherine ;
Belhadj, Karim ;
Bordessoule, Dominique ;
Ferme, Christophe ;
Tilly, Herve .
BLOOD, 2010, 116 (12) :2040-2045
[6]   Current updates on generations, approvals, and clinical trials of CAR T-cell therapy [J].
Dejenie, Tadesse Asmamaw ;
Medhin, Markeshaw Tiruneh G. ;
Terefe, Gashaw Dessie ;
Admasu, Fitalew Tadele ;
Tesega, Wondwossen Wale ;
Abebe, Endeshaw Chekol .
HUMAN VACCINES & IMMUNOTHERAPEUTICS, 2022, 18 (06)
[7]   Long-term results of the R-CHOP study in the treatment of elderly patients with diffuse large B-cell lymphoma:: A study by the groupe d'Etude des lymphomes de l'adulte [J].
Feugier, P ;
Van Hoof, A ;
Sebban, C ;
Solal-Celigny, P ;
Bouabdallah, R ;
Fermé, C ;
Christian, B ;
Lepage, E ;
Tilly, H ;
Morschhauser, F ;
Gaulard, P ;
Salles, G ;
Bosly, A ;
Gisselbrecht, C ;
Reyes, F ;
Coiffier, B .
JOURNAL OF CLINICAL ONCOLOGY, 2005, 23 (18) :4117-4126
[8]   GSVA: gene set variation analysis for microarray and RNA-Seq data [J].
Haenzelmann, Sonja ;
Castelo, Robert ;
Guinney, Justin .
BMC BIOINFORMATICS, 2013, 14
[9]   Armored CAR T-Cells: The Next Chapter in T-Cell Cancer Immunotherapy [J].
Hawkins, Elizabeth R. ;
D'Souza, Reena R. ;
Klampatsa, Astero .
BIOLOGICS-TARGETS & THERAPY, 2021, 15 :95-105
[10]  
Jia Z, 2024, Int J Biol Macromol, V282