DNA barcoding: An effective molecular tool for species identification, molecular authentication and phylogeny studies in plant science research

被引:0
作者
Nair, Vadakkemuriyil Divya [1 ]
Aseema, Parida [1 ]
Saini, Khem Chand [2 ]
机构
[1] Cent Univ Himachal Pradesh, Dept Plant Sci, Shahpur Campus, Kangra 176206, Himachal Prades, India
[2] Nirwan Univ, Sch Basic & Appl Sci, Jaipur 303305, Rajasthan, India
来源
PLANT SCIENCE TODAY | 2024年 / 11卷 / 04期
关键词
CBOL; DNA barcoding; DNA marker; rbcL; matK; ITS; trnH-psbA; ADULTERATION; ITS2; POLYMORPHISM; ANGIOSPERMS; CHALLENGES; TAXONOMY; DIPTERA; SAMPLES; LIFE;
D O I
10.14719/pst.3183
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
DNA barcoding is a technique for identifying specimens using brief, standardised DNA segments. In a variety of fields, including phylogeny, ecology, population genetics and biodiversity, DNA barcoding has become a successful method for precisely distinguishing species. The method is straightforward, efficient in both time and money and accurate. The key to successful DNA barcoding is choosing the right DNA marker. Since the idea of a quick approach for species identification was first put up in 2003, the scientific community has been keen to realise the potential of DNA barcodes. Cytochrome c oxidase, I (COI) region of the mitochondrial genome is mostly recognised as a standard barcoding region in animals. Later, rbcL + matK pairing, with a 70 % discriminating efficiency, was suggested by the Plant Working Group (PWG) of the Consortium for the Barcoding of Life (CBOL) as the standard barcode in plants. Three conditions must be met for a gene region to be an efficient DNA barcode: it must have sufficient species-level genetic divergence and variability, it must have conserved flanking regions for the widest taxonomic use and for generating universal PCR primers and it should be long enough to facilitate current capability for sequencing and extracting DNA. Different combinations of plastid coding, non-coding and nuclear markers are utilised as supplemental markers to boost the degree of plant species differentiation. The reliability of different barcodes in distinguishing species varies among different groups of plants. As DNA barcoding approaches its twentieth anniversary, technologies are still being developed that make use of this resource, which is constantly expanding in a variety of biological disciplines. Plant DNA barcoding, which became a scientific advance during the last ten years, is frequently employed as a taxonomical aid in identifying species. It is a way of choosing genetic loci that identifies and distinguishes an organism's membership from specific species, variations or even intervarieties. It varies from molecular phylogeny, which identifies an unknown sample from an existing classification rather than identifying patterns of association.
引用
收藏
页码:204 / 218
页数:15
相关论文
共 171 条
  • [1] Endorsement and phylogenetic analysis of some Fabaceae plants based on DNA barcoding
    Abdelsalam, Nader R.
    Hasan, Mohamed E.
    Javed, Talha
    Rabie, Samar M. A.
    El-Wakeel, Houssam El-Din M. F.
    Zaitoun, Amera F.
    Abdelsalam, Aly Z.
    Aly, Hesham M.
    Ghareeb, Rehab Y.
    Hemeida, Alaa A.
    Shah, Adnan Noor
    [J]. MOLECULAR BIOLOGY REPORTS, 2022, 49 (06) : 5645 - 5657
  • [2] Development of species-specific chloroplast markers for the authentication of Gynostemma pentaphyllum and their distribution in the Korean peninsula
    Abid, Suleman
    Mohanan, Padmanaban
    Kaliraj, Lalitha
    Park, Jin Kyu
    Ahn, Jong Chan
    Yang, Deok Chun
    [J]. FITOTERAPIA, 2019, 138
  • [3] Assessing product adulteration of Eurycoma longifolia (Tongkat Ali) herbal medicinal product using DNA barcoding and HPLC analysis
    Abubakar, Bashir Mohammed
    Salleh, Faezah Mohd
    Omar, Mohd Shahir Shamsir
    Wagiran, Alina
    [J]. PHARMACEUTICAL BIOLOGY, 2018, 56 (01) : 368 - 377
  • [4] Pragmatic Applications and Universality of DNA Barcoding for Substantial Organisms at Species Level: A Review to Explore a Way Forward
    Ahmed, Sarfraz
    Ibrahim, Muhammad
    Nantasenamat, Chanin
    Nisar, Muhammad Farrukh
    Malik, Aijaz Ahmad
    Waheed, Rashem
    Ahmed, Muhammad Z.
    Ojha, Suvash Chandra
    Alam, Mohammad Khursheed
    [J]. BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [5] Ahmed SS, 2022, DNA barcoding in plants and animals: a critical review, DOI [10.20944/preprints202201.0310.v1, DOI 10.20944/PREPRINTS202201.0310.V1]
  • [6] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [7] Detection of adulteration in black gram-based food products using DNA barcoding
    Amane, Dhanashree
    Ananthanarayan, Laxmi
    [J]. FOOD CONTROL, 2019, 104 : 193 - 200
  • [8] Authentication of the market samples of Ashwagandha by DNA barcoding reveals that powders are significantly more adulterated than roots
    Amritha, Nagendraprasad
    Bhooma, Varadharajan
    Parani, Madasamy
    [J]. JOURNAL OF ETHNOPHARMACOLOGY, 2020, 256
  • [9] Evaluating the capacity of plant DNA barcodes to discriminate species of cotton (Gossypium: Malvaceae)
    Ashfaq, Muhammad
    Asif, Muhammad
    Anjum, Zahid Iqbal
    Zafar, Yusuf
    [J]. MOLECULAR ECOLOGY RESOURCES, 2013, 13 (04) : 573 - 582
  • [10] Awano T, 2009, P NATL ACAD SCI USA, V106, P2794, DOI [10.1073/pnas.0812297106, 10.1073/pnas.0905845106]