Application of Machine Learning in the Development of Fourth Degree Quantitative Structure-Activity Relationship Model for Triclosan Analogs Tested against Plasmodium falciparum 3D7

被引:0
作者
Guimaraes, Railton Marques de Souza [1 ,2 ]
Vieira, Ivo Henrique Provensi [1 ,3 ]
Zanchi, Fabricio Berton [4 ]
Caceres, Rafael Andrade [5 ]
Zanchi, Fernando Berton [1 ,3 ,6 ,7 ]
机构
[1] Fundacao Oswaldo Cruz Rondoonia, Lab Bioinformat & Quim Med, BR-76812245 Porto Velho, Rondonia, Brazil
[2] Ctr Univ Afya, Fac Biomed, BR-76805846 Porto Velho, Rondonia, Brazil
[3] Inst Nacl Epidemiol Amazoonia Ocidental EPIAMO, BR-76812245 Porto Velho, Rondonia, Brazil
[4] Univ Fed Sul Bahia UFSB, Ctr Formacao Ciencias Ambientais CFCAm, BR-45810000 Porto Seguro, BA, Brazil
[5] Univ Fed Ciencias Saude Porto Alegre UFCSPA, Lab Bioinformat Estrutural Modelagem Mol & Simulac, Programa Posgrad Biociencias, BR-90050170 Porto Alegre, RS, Brazil
[6] Univ Fed Rondonia UNIR, Programa Posgrad Biol Expt PGBIOEXP, FIOCRUZ Rondonia, BR-76812245 Porto Velho, Rondonia, Brazil
[7] FIOCRUZ Rondonia, Programa Posgrad Rede BIONORTE, BR-76812245 Porto Velho, Rondonia, Brazil
来源
ACS OMEGA | 2024年 / 9卷 / 44期
关键词
CARRIER PROTEIN REDUCTASE; DIARYL ETHER INHIBITORS; BIOLOGICAL-ACTIVITY; PATHWAY;
D O I
10.1021/acsomega.4c05768
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Despite new therapies against malaria, this disease remains one of the main causes of death affecting humanity. The phenomenon of resistance has caused concern as the drugs no longer have the same efficacy, forcing scientific research to develop new methods that prospect new molecules. With the advancement of artificial intelligence, it becomes possible to apply machine learning (ML) techniques in the discovery and evaluation of new molecules, by employing the quantitative structure-activity relationship (QSAR), a classic method that uses regressions to create a model that allows identifying and evaluating new drug candidates. This work combined QSAR with ML and developed a supervised model that modeled a fourth degree polynomial equation capable of identifying new drug candidates derived from the triclosan compound-a classic inhibitor of Plasmodium falciparum growth, the cause of severe malaria. The model produces an R-2 greater than 80% for training and concurrent testing, as well as a correlation index greater than 80% between the calculated and experimental pEC(50) (negative logarithm of half maximal effective concentration) data. In addition, a web software (PlasmoQSAR) was created that allows researchers to calculate the EC50 (half maximal effective concentration) of new molecules using the developed analytical method.
引用
收藏
页码:44436 / 44447
页数:12
相关论文
共 45 条
  • [1] AJartarghar H., 2022, J TELECOMMUN ELECT C, V14, P25, DOI [10.54554/jtec.2022.14.04.005, DOI 10.54554/JTEC.2022.14.04.005]
  • [2] Novel diaryl ureas with efficacy in a mouse model of malaria
    Anderson, John W.
    Sarantakis, Dimitri
    Terpinski, Jacek
    Kumar, T. R. Santha
    Tsai, Han-Chun
    Kuo, Mack
    Ager, Arba L.
    Jacobs, William R., Jr.
    Schiehser, Guy A.
    Ekins, Sean
    Sacchettini, James C.
    Jacobus, David P.
    Fidock, David A.
    Freundlich, Joel S.
    [J]. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2013, 23 (04) : 1022 - 1025
  • [3] [Anonymous], 2011, Int J Drug Design and Discov.
  • [4] DeepMalaria: Artificial Intelligence Driven Discovery of Potent Antiplasmodials
    Arshadi, Arash Keshavarzi
    Salem, Milad
    Collins, Jennifer
    Yuan, Jiann Shiun
    Chakrabarti, Debopam
    [J]. FRONTIERS IN PHARMACOLOGY, 2020, 10
  • [5] Leverage, residual, and interaction diagnostics for subsets of cases in least squares regression
    Barrett, BE
    Gray, JB
    [J]. COMPUTATIONAL STATISTICS & DATA ANALYSIS, 1997, 26 (01) : 39 - 52
  • [6] Structure-Based Design and Pharmacophore-Based Virtual Screening of Combinatorial Library of Triclosan Analogues Active against Enoyl-Acyl Carrier Protein Reductase of Plasmodium falciparum with Favourable ADME Profiles
    Bieri, Cecile
    Esmel, Akori
    Keita, Melalie
    Owono, Luc Calvin Owono
    Dali, Brice
    Megnassan, Eugene
    Miertus, Stanislav
    Frecer, Vladimir
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (08)
  • [7] Bierman G, 2014, LECT NOTES COMPUT SC, V8586, P257
  • [8] Plasmodium dihydrofolate reductase is a second enzyme target for the antimalarial action of triclosan
    Bilsland, Elizabeth
    van Vliet, Liisa
    Williams, Kevin
    Feltham, Jack
    Carrasco, Marta P.
    Fotoran, Wesley L.
    Cubillos, Eliana F. G.
    Wunderlich, Gerhard
    Grotli, Morten
    Hollfelder, Florian
    Jackson, Victoria
    King, Ross D.
    Oliver, Stephen G.
    [J]. SCIENTIFIC REPORTS, 2018, 8
  • [9] cdc, PARASITESMALARIA
  • [10] Descriptor Free QSAR Modeling Using Deep Learning With Long Short-Term Memory Neural Networks
    Chakravarti, Suman K.
    Alla, Sai Radha Mani
    [J]. FRONTIERS IN ARTIFICIAL INTELLIGENCE, 2019, 2