Streptomyces castrisilvae sp. nov. and Streptomyces glycanivorans sp. nov., novel soil streptomycetes metabolizing mutan and alternan

被引:0
|
作者
Widen, Tove [1 ]
Rangel, Albert Tafur [1 ,2 ,6 ]
Lombard, Vincent [3 ]
Drula, Elodie [3 ,4 ]
Mazurkewich, Scott [1 ]
Terrapon, Nicolas [3 ]
Kerkhoven, Eduard J. [1 ,2 ]
Larsbrink, Johan [1 ,5 ]
机构
[1] Chalmers Univ Technol, Dept Life Sci, SE-41296 Gothenburg, Sweden
[2] Tech Univ Denmark, Novo Nord Fdn Ctr Biosustainabil, DK-2800 Lyngby, Denmark
[3] CNRS, USC INRAE 1408, UMR AMU 7257, Architecture & Fonct Macromol Biol, FR-13288 Marseille, France
[4] Aix Marseille Univ, INRAE, Biodivers & Biotechnol Fong, UMR 1163, Marseille, France
[5] Chalmers Univ Technol, Wallenberg Wood Sci Ctr, SE-41296 Gothenburg, Sweden
[6] Univ Popular Cesar, Dept Microbiol, Valledupar, Colombia
基金
瑞典研究理事会;
关键词
alpha-; glucan; alternan; carbohydrate- active enzymes; mutan; Streptomyces; whole- genome sequencing; ALPHA-1,3-GLUCANASE; DATABASE; FAMILY; GENE; PHYLOGENIES; SEQUENCE; GENOMES; CLONING;
D O I
10.1099/ijsem.0.006514
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Six bacterial strains, Mut1T, T , Mut2, Alt1, Alt2, Alt3T, T , and Alt4, were isolated from soil samples collected in parks in Gothenburg, Sweden, based on their ability to utilize the insoluble polysaccharides alpha- 1,3- glucan (mutan; Mut strains) or the mixed- linkage alpha- 1,3/ alpha- 1,6- glucan (alternan; Alt strains). Analysis of 16S rRNA gene sequences identified all strains as members of the genus Streptomyces. . The genomes of the strains were sequenced and subsequent phylogenetic analyses identified Mut2 as a strain of Streptomyces laculatispora and Alt1, Alt2 and Alt4 as strains of Streptomyces poriferorum, while Mut1T T and Alt3T T were most closely related to the type strains Streptomyces drozdowiczii NBRC 101007T T and Streptomyces atroolivaceus NRRL ISP5137T, T , respectively. Comprehensive genomic and biochemical characterizations were conducted, highlighting typical features of Streptomyces, , such as large genomes (8.0-9.6 Mb) with high G+C content (70.5-72.0%). All six strains also encode a wide repertoire of putative carbohydrate- active enzymes, indicating a capability to utilize various complex polysaccharides as carbon sources such as starch, mutan, and cellulose, which was confirmed experimentally. Based on phylogenetic and phenotypic characterization, our study suggests that strains Mut1T T and Alt3T T represent novel species in the genus Streptomyces for which the names Streptomyces castrisilvae sp. nov. and Streptomyces glycanivorans sp. nov. are proposed, with strains Mut1T T (=DSM 117248T=CCUG T =CCUG 77596T) T ) and Alt3T T (=DSM 117252T=CCUG T =CCUG 77600T) T ) representing the respective type strains.
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页数:14
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