Multi-Omics Approaches Against Abiotic and Biotic Stress-A Review

被引:0
作者
Varadharajan, Venkatramanan [1 ]
Rajendran, Radhika [2 ]
Muthuramalingam, Pandiyan [3 ,4 ]
Runthala, Ashish [5 ]
Madhesh, Venkatesh [1 ]
Swaminathan, Gowtham [1 ]
Murugan, Pooja [1 ]
Srinivasan, Harini [1 ]
Park, Yeonju [4 ]
Shin, Hyunsuk [3 ,4 ]
Ramesh, Manikandan [6 ]
机构
[1] PSG Coll Technol, Dept Biotechnol, Coimbatore 641004, India
[2] Indian Council Agr Res ICAR, Natl Inst Plant Biotechnol NIPB, PUSA Campus, New Delhi 110012, India
[3] Gyeongsang Natl Univ, Coll Agr & Life Sci, Div Hort Sci, Jinju 52725, South Korea
[4] Gyeongsang Natl Univ, Dept GreenBio Sci, Jinju 52725, South Korea
[5] SR Univ, Sch Sci & Humanities, Dept Basic Sci, Warangal 506371, India
[6] Alagappa Univ, Dept Biotechnol, Karaikkudi 630003, India
来源
PLANTS-BASEL | 2025年 / 14卷 / 06期
关键词
abiotic stress; biotic stress; crop plants; CRISPR-Cas9; multi-omics; FUSARIUM HEAD BLIGHT; ZINC-FINGER PROTEIN; TRANSCRIPTION FACTOR; GENE-EXPRESSION; FUNCTIONAL-ANALYSIS; SALT TOLERANCE; GRAIN-YIELD; INDUCIBLE PROMOTER; METABOLIC PATHWAYS; PHENOLIC-COMPOUNDS;
D O I
10.3390/plants14060865
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Plants face an array of environmental stresses, including both abiotic and biotic stresses. These stresses significantly impact plant lifespan and reduce agricultural crop productivity. Abiotic stresses, such as ultraviolet (UV) radiation, high and low temperatures, salinity, drought, floods, heavy metal toxicity, etc., contribute to widespread crop losses globally. On the other hand, biotic stresses, such as those caused by insects, fungi, and weeds, further exacerbate these challenges. These stressors can hinder plant systems at various levels, including molecular, cellular, and development processes. To overcome these challenges, multi-omics computational approaches offer a significant tool for characterizing the plant's biomolecular pool, which is crucial for maintaining homeostasis and signaling response to environmental changes. Integrating multiple layers of omics data, such as proteomics, metabolomics, ionomics, interactomics, and phenomics, simplifies the study of plant resistance mechanisms. This comprehensive approach enables the development of regulatory networks and pathway maps, identifying potential targets for improving resistance through genetic engineering or breeding strategies. This review highlights the valuable insights from integrating multi-omics approaches to unravel plant stress responses to both biotic and abiotic factors. By decoding gene regulation and transcriptional networks, these techniques reveal critical mechanisms underlying stress tolerance. Furthermore, the role of secondary metabolites in bio-based products in enhancing plant stress mitigation is discussed. Genome editing tools offer promising strategies for improving plant resilience, as evidenced by successful case studies combating various stressors. On the whole, this review extensively discusses an advanced multi-omics approach that aids in understanding the molecular basis of resistance and developing novel strategies to improve crops' or organisms' resilience to abiotic and biotic stresses.
引用
收藏
页数:33
相关论文
共 210 条
[1]   Alleviation of the adverse effects of salinity stress using trehalose in two rice varieties [J].
Abdallah, M. M. -S. ;
Abdelgawad, Z. A. ;
El-Bassiouny, H. M. S. .
SOUTH AFRICAN JOURNAL OF BOTANY, 2016, 103 :275-282
[2]   Algal-Mediated Nanoparticles, Phycochar, and Biofertilizers for Mitigating Abiotic Stresses in Plants: A Review [J].
Abideen, Zainul ;
Waqif, Huma ;
Munir, Neelma ;
El-Keblawy, Ali ;
Hasnain, Maria ;
Radicetti, Emanuele ;
Mancinelli, Roberto ;
Nielsen, Brent L. ;
Haider, Ghulam .
AGRONOMY-BASEL, 2022, 12 (08)
[3]   Role of Proteomics in Crop Stress Tolerance [J].
Ahmad, Parvaiz ;
Latef, Arafat A. H. Abdel ;
Rasool, Saiema ;
Akram, Nudrat A. ;
Ashraf, Muhammad ;
Gucel, Salih .
FRONTIERS IN PLANT SCIENCE, 2016, 7
[4]   Proteomics in Systems Biology [J].
Aizat, Wan Mohd ;
Hassan, Maizom .
OMICS APPLICATIONS FOR SYSTEMS BIOLOGY, 2018, 1102 :31-49
[5]   Recent advancement in OMICS approaches to enhance abiotic stress tolerance in legumes [J].
Ali, Amjad ;
Altaf, Muhammad Tanveer ;
Nadeem, Muhammad Azhar ;
Karakoey, Tolga ;
Shah, Adnan Noor ;
Azeem, Hajra ;
Baloch, Faheem Shehzad ;
Baran, Nurettin ;
Hussain, Tajamul ;
Duangpan, Saowapa ;
Aasim, Muhammad ;
Boo, Kyung-Hwan ;
Abdelsalam, Nader R. ;
Hasan, Mohamed E. ;
Chung, Yong Suk .
FRONTIERS IN PLANT SCIENCE, 2022, 13
[6]   Ionomic Approaches for Discovery of Novel Stress-Resilient Genes in Plants [J].
Ali, Sajad ;
Tyagi, Anshika ;
Bae, Hanhong .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (13)
[7]   Decoding early stress signaling waves in living plants using nanosensor multiplexing [J].
Ang, Mervin Chun-Yi ;
Saju, Jolly Madathiparambil ;
Porter, Thomas K. ;
Mohaideen, Sayyid ;
Sarangapani, Sreelatha ;
Khong, Duc Thinh ;
Wang, Song ;
Cui, Jianqiao ;
Loh, Suh In ;
Singh, Gajendra Pratap ;
Chua, Nam-Hai ;
Strano, Michael S. ;
Sarojam, Rajani .
NATURE COMMUNICATIONS, 2024, 15 (01)
[8]   Biotechnological Advances to Improve Abiotic Stress Tolerance in Crops [J].
Angel Villalobos-Lopez, Miguel ;
Arroyo-Becerra, Analilia ;
Quintero-Jimenez, Anareli ;
Iturriaga, Gabriel .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (19)
[9]   Role of plant secondary metabolites in defence and transcriptional regulation in response to biotic stress [J].
Anjali, Sumit ;
Kumar, Sumit ;
Korra, Tulasi ;
Thakur, Rajneesh ;
Arutselvan, R. ;
Kashyap, Abhijeet Shankar ;
Nehela, Yasser ;
Chaplygin, Victor ;
Minkina, Tatiana ;
Keswani, Chetan .
PLANT STRESS, 2023, 8
[10]   Reactive oxygen species: Metabolism, oxidative stress, and signal transduction [J].
Apel, K ;
Hirt, H .
ANNUAL REVIEW OF PLANT BIOLOGY, 2004, 55 :373-399