The landscape of higher education has changed significantly with the development of autonomous colleges. These institutions have become well-known for their cutting-edge methods of academic governance, curriculum design, and decision-making. Additional levels of autonomy from conventional regulatory frameworks give autonomous institutions the freedom to customize their educational programs to better meet the needs of their students and the requirements of the changing labor market. This method supports the development of skills, critical thinking, and a creative learning environment. Colleges that have autonomy must create and manage their own infrastructure, industrial partnerships, and research projects. Financial and administrative resources may be strained as a result, especially in newer or smaller organizations. Additionally, the greater accountability for decision-making and governance may result in administrative challenges and potential conflicts. To make sure that autonomy does not result in inefficiencies or a degradation of academic quality, it becomes crucial to construct a strong framework for efficient governance and resource allocation. In higher education institutions, scheduling internships, skill labs, open electives, departmental electives, and honor courses presents a variety of issues. A strong quality assurance system, curriculum collaboration, teacher development, student engagement techniques, and effective resource allocation must all be used to address these issues. For these academic components to significantly impact students' learning experiences, careful planning and a proactive mindset are required. This paper presents several methods to address the challenges that have emerged as a result of several factors such as internships, skill development laboratories, open electives, and honor courses.