Advances in Single-cell Multi-omics Analysis Based on Mass Spectrometry

被引:0
作者
Huo, Zhiyuan [1 ,2 ]
Zhou, Jinping [3 ]
Ma, Xiumin [3 ]
Zhou, Yan [1 ,2 ]
Huang, Lin [1 ,2 ]
机构
[1] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Sch Med, Dept Clin Lab, Shanghai 200030, Peoples R China
[2] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Inst Thorac Oncol, Sch Med, Shanghai 200030, Peoples R China
[3] Xinjiang Med Univ, Tumor Hosp, Clin Lab Ctr, Urumqi 830011, Peoples R China
来源
CHEMICAL JOURNAL OF CHINESE UNIVERSITIES-CHINESE | 2024年 / 45卷 / 11期
基金
中国国家自然科学基金;
关键词
Single-cell; Mass spectrometry technology; Metabolomics; Proteomics; Multi-omics analysis; METABOLIC FINGERPRINTS; CYTOMETRY; SYSTEM;
D O I
10.7503/cjcu20240389
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
With the rapid development of mass spectrometry technology in recent years, single-cell mass spectrometry has played an increasingly vital role in the field of life sciences. Mass spectrometry has been widely applied to detect the metabolome and proteome of cell populations. The multi-omics technology of single-cell mass spectrometry combines microscopic biology with cutting-edge mass spectrometry analysis, providing a powerful tool for in-depth study at the single-cell level and further clarifying the micro-level complexity of cells. Especially in biomedical applications, single-cell mass spectrometry multi-omics helps to build cell atlas, explore the molecular mechanisms of biological phenomena, and promote the development of precision medicine. Therefore, this article systematically summarizes and reviews the challenges and breakthroughs in the development of mass spectrometry- based single-cell metabolism, proteomics, and multi-omics technologies in recent years, and provides an outlook on its future development trends.
引用
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页数:12
相关论文
共 56 条
[21]   Digital microfluidic isolation of single cells for -Omics [J].
Lamanna, Julian ;
Scott, Erica Y. ;
Edwards, Harrison S. ;
Chamberlain, M. Dean ;
Dryden, Michael D. M. ;
Peng, Jiaxi ;
Mair, Barbara ;
Lee, Adam ;
Chan, Calvin ;
Sklavounos, Alexandros A. ;
Heffernan, Austin ;
Abbas, Farhana ;
Lam, Charis ;
Olson, Maxwell E. ;
Moffat, Jason ;
Wheeler, Aaron R. .
NATURE COMMUNICATIONS, 2020, 11 (01)
[22]   Microfluidic single cell analysis: from promise to practice [J].
Lecault, Veronique ;
White, Adam K. ;
Singhal, Anupam ;
Hansen, Carl L. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2012, 16 (3-4) :381-390
[23]   Integrative Methods and Practical Challenges for Single-Cell Multi-omics [J].
Ma, Anjun ;
McDermaid, Adam ;
Xu, Jennifer ;
Chang, Yuzhou ;
Ma, Qin .
TRENDS IN BIOTECHNOLOGY, 2020, 38 (09) :1007-1022
[24]   Single-Cell Multiomics: Multiple Measurements from Single Cells [J].
Macaulay, Iain C. ;
Ponting, Chris P. ;
Voet, Thierry .
TRENDS IN GENETICS, 2017, 33 (02) :155-168
[25]   Global and Spatial Metabolomics of Individual Cells Using a Tapered Pneumatically Assisted nano-DESI Probe [J].
Marques, Catia ;
Friedrich, Felix ;
Liu, Liangwen ;
Castoldi, Francesca ;
Pietrocola, Federico ;
Lanekoff, Ingela .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2023, 34 (11) :2518-2524
[26]   The promise of organoids for unraveling the proteomic landscape of the developing human brain [J].
Melliou, Sofia ;
Sangster, Kevin T. ;
Djuric, Ugljesa ;
Diamandis, Phedias .
MOLECULAR PSYCHIATRY, 2022, 27 (01) :73-80
[27]   Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis [J].
Mennillo, Elvira ;
Kim, Yang Joon ;
Lee, Gyehyun ;
Rusu, Iulia ;
Patel, Ravi K. ;
Dorman, Leah C. ;
Flynn, Emily ;
Li, Stephanie ;
Bain, Jared L. ;
Andersen, Christopher ;
Rao, Arjun ;
Tamaki, Stanley ;
Tsui, Jessica ;
Shen, Alan ;
Lotstein, Madison L. ;
Rahim, Maha ;
Naser, Mohammad ;
Bernard-Vazquez, Faviola ;
Eckalbar, Walter ;
Cho, Soo-jin ;
Beck, Kendall ;
El-Nachef, Najwa ;
Lewin, Sara ;
Selvig, Daniel R. ;
Terdiman, Jonathan P. ;
Mahadevan, Uma ;
Oh, David Y. ;
Fragiadakis, Gabriela K. ;
Pisco, Angela ;
Combes, Alexis J. ;
Kattah, Michael G. .
NATURE COMMUNICATIONS, 2024, 15 (01)
[28]  
Misra BB, 2020, METHODS MOL BIOL, V2064, P191, DOI 10.1007/978-1-4939-9831-9_15
[29]   Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging [J].
Mogilenko, Denis A. ;
Shpynov, Oleg ;
Andhey, Prabhakar Sairam ;
Arthur, Laura ;
Swain, Amanda ;
Esaulova, Ekaterina ;
Brioschi, Simone ;
Shchukina, Irina ;
Kerndl, Martina ;
Bambouskova, Monika ;
Yao, Zhangting ;
Laha, Anwesha ;
Zaitsev, Konstantin ;
Burdess, Samantha ;
Gillfilan, Susan ;
Stewart, Sheila A. ;
Colonna, Marco ;
Artyomov, Maxim N. .
IMMUNITY, 2021, 54 (01) :99-+
[30]   Chemical Analysis of Single Cells [J].
Oomen, Pieter E. ;
Aref, Mohaddeseh A. ;
Kaya, Ibrahim ;
Phan, Nhu T. N. ;
Ewing, Andrew G. .
ANALYTICAL CHEMISTRY, 2019, 91 (01) :588-621