Complete genome sequence of Promicromonospora sp. strain Populi, an actinobacterium isolated from Populus trichocarpa rhizosphere

被引:0
作者
Podar, Mircea [1 ]
Hochanadel, Leah H. [1 ]
Alexander, William G. [1 ]
Schadt, Christopher W. [1 ]
Pelletier, Dale A. [1 ]
机构
[1] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37830 USA
关键词
rhizosphere; bacteria; symbiosis; plant-microbe interactions; SP NOV; ROOT;
D O I
10.1128/mra.00851-24
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Promicromonospora sp. strain Populi is an actinobacterium isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa. We completely sequenced its 5.2-Mbp chromosome using Oxford Nanopore long reads and predicted it to encode 4,685 proteins, 3 rRNA operons, and 54 tRNAs and noncoding RNAs.
引用
收藏
页数:4
相关论文
共 21 条
  • [1] KBase: The United States Department of Energy Systems Biology Knowledgebase
    Arkin, Adam P.
    Cottingham, Robert W.
    Henry, Christopher S.
    Harris, Nomi L.
    Stevens, Rick L.
    Maslov, Sergei
    Dehal, Paramvir
    Ware, Doreen
    Perez, Fernando
    Canon, Shane
    Sneddon, Michael W.
    Henderson, Matthew L.
    Riehl, William J.
    Murphy-Olson, Dan
    Chan, Stephen Y.
    Kamimura, Roy T.
    Kumari, Sunita
    Drake, Meghan M.
    Brettin, Thomas S.
    Glass, Elizabeth M.
    Chivian, Dylan
    Gunter, Dan
    Weston, David J.
    Allen, Benjamin H.
    Baumohl, Jason
    Best, Aaron A.
    Bowen, Ben
    Brenner, Steven E.
    Bun, Christopher C.
    Chandonia, John-Marc
    Chia, Jer-Ming
    Colasanti, Ric
    Conrad, Neal
    Davis, James J.
    Davison, Brian H.
    DeJongh, Matthew
    Devoid, Scott
    Dietrich, Emily
    Dubchak, Inna
    Edirisinghe, Janaka N.
    Fang, Gang
    Faria, Jose P.
    Frybarger, Paul M.
    Gerlach, Wolfgang
    Gerstein, Mark
    Greiner, Annette
    Gurtowski, James
    Haun, Holly L.
    He, Fei
    Jain, Rashmi
    [J]. NATURE BIOTECHNOLOGY, 2018, 36 (07) : 566 - 569
  • [2] Actinomycetes benefaction role in soil and plant health
    Bhatti, Asma Absar
    Haq, Shamsul
    Bhat, Rouf Ahmad
    [J]. MICROBIAL PATHOGENESIS, 2017, 111 : 458 - 467
  • [3] Cultivating the Bacterial Microbiota of Populus Roots
    Carper, Dana L.
    Weston, David J.
    Barde, Aditya
    Timm, Collin M.
    Lu, Tse-Yuan
    Burdick, Leah H.
    Jawdy, Sara S.
    Klingeman, Dawn M.
    Robeson, Michael S., II
    Veach, Allison M.
    Cregger, Melissa A.
    Kalluri, Udaya C.
    Schadt, Christopher W.
    Podar, Mircea
    Doktycz, Mitchel J.
    Pelletier, Dale A.
    [J]. MSYSTEMS, 2021, 6 (03)
  • [4] Assessment of the rhizosphere fungi and bacteria recruited by sugarcane during smut invasion
    Duan, Mingzheng
    Wang, Lingqiang
    Song, Xiupeng
    Zhang, Xiaoqiu
    Wang, Zeping
    Lei, Jingchao
    Yan, Meixin
    [J]. BRAZILIAN JOURNAL OF MICROBIOLOGY, 2023, 54 (01) : 385 - 395
  • [5] Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum
    Guesmi, Sihem
    Nouioui, Imen
    Pujic, Petar
    Dubost, Audrey
    Najjari, Afef
    Ghedira, Kais
    Igual, Jose M.
    Cherif, Ameur
    Klenk, Hans-peter
    Sghaier, Haitham
    Normand, Philippe
    [J]. EXTREMOPHILES, 2021, 25 (01) : 25 - 38
  • [6] High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
    Jain, Chirag
    Rodriguez-R, Luis M.
    Phillippy, Adam M.
    Konstantinidis, Konstantinos T.
    Aluru, Srinivas
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [7] Promicromonospora callitridis sp nov., an endophytic actinobacterium isolated from the surface-sterilized root of an Australian native pine tree
    Kaewkla, Onuma
    Franco, Christopher M. M.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (09) : 3559 - 3563
  • [8] Promicromonospora endophytica sp nov., an endophytic actinobacterium isolated from the root of an Australian native Grey Box tree
    Kaewkla, Onuma
    Franco, Christopher M. M.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 : 1687 - 1691
  • [9] Gibberellin-producing Promicromonospora sp SE188 improves Solanum lycopersicum plant growth and influences endogenous plant hormones
    Kang, Sang-Mo
    Khan, Abdul Latif
    Hamayun, Muhammad
    Hussain, Javid
    Joo, Gil-Jae
    You, Young-Hyun
    Kim, Jong-Guk
    Lee, In-Jung
    [J]. JOURNAL OF MICROBIOLOGY, 2012, 50 (06) : 902 - 909
  • [10] Climatic Aridity Gradient Modulates the Diversity of the Rhizosphere and Endosphere Bacterial Microbiomes ofOpuntia ficus-indica
    Karray, Fatma
    Gargouri, Mahmoud
    Chebaane, Asma
    Mhiri, Najla
    Mliki, Ahmed
    Sayadi, Sami
    [J]. FRONTIERS IN MICROBIOLOGY, 2020, 11