The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator

被引:0
作者
Yuan, Ruizhong [1 ,2 ,3 ]
Zheng, Boying [1 ,2 ,3 ]
Li, Zekai [1 ,2 ,3 ]
Ma, Xingzhou [1 ,2 ,3 ]
Shu, Xiaohan [1 ,2 ,3 ,4 ]
Qu, Qiuyu [1 ,2 ,3 ,4 ]
Ye, Xiqian [1 ,2 ,3 ]
Li, Sheng [5 ,6 ]
Tang, Pu [1 ,2 ,3 ]
Chen, Xuexin [1 ,2 ,3 ,4 ]
机构
[1] Zhejiang Univ, Inst Insect Sci, Coll Agr & Biotechnol, Hangzhou 310058, Peoples R China
[2] Zhejiang Univ, State Key Lab Rice Biol, Minist Agr Key Lab Mol Biol Crop Pathogens & Insec, Hangzhou 310058, Peoples R China
[3] Zhejiang Univ, Zhejiang Prov Key Lab Biol Crop Pathogens & Insect, Hangzhou 310058, Peoples R China
[4] Zhejiang Univ, Hainan Inst, Sanya 572025, Peoples R China
[5] South China Normal Univ, Inst Insect Sci & Technol, Sch Life Sci, Guangdong Prov Key Lab Insect Dev Biol & Appl Tech, Guangzhou 510631, Peoples R China
[6] South China Normal Univ, Guangmeiyuan R&D Ctr, Guangdong Prov Key Lab Insect Dev Biol & Appl Tech, Meizhou 514779, Peoples R China
来源
GIGASCIENCE | 2023年 / 12卷
基金
中国国家自然科学基金;
关键词
Mantodea; Tenodera sinensis; chromosome; insect genomics; mantis; digestive demand; predation behavior; TRANSPOSABLE ELEMENTS; EVOLUTION; ALIGNMENT; ANNOTATION; SYSTEM; SEQUENCE; PROGRAM; VISION; RECONSTRUCTION; VISUALIZATION;
D O I
暂无
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background The Chinese praying mantis, Tenodera sinensis (Saussure), is a carnivorous insect that preys on a variety of arthropods and small vertebrates, including pest species. Several studies have been conducted to understand its behavior and physiology. However, there is limited knowledge about the genetic information underlying its genome evolution, digestive demands, and predatory behaviors. Findings Here we have assembled the chromosome-level genome of T. sinensis, representing the first sequenced genome of the family Mantidae, with a genome size of 2.54 Gb and scaffold N50 of 174.78 Mb. Our analyses revealed that 98.6% of BUSCO genes are present, resulting in a well-annotated assembly compared to other insect genomes, containing 25,022 genes. The reconstructed phylogenetic analysis showed the expected topology placing the praying mantis in an appropriate position. Analysis of transposon elements suggested the Gypsy/Dirs family, which belongs to long terminal repeat (LTR) transposons, may be a key factor resulting in the larger genome size. The genome shows expansions in several digestion and detoxification associated gene families, including trypsin and glycosyl hydrolase (GH) genes, ATP-binding cassette (ABC) transporter, and carboxylesterase (CarE), reflecting the possible genomic basis of digestive demands. Furthermore, we have found 1 ultraviolet-sensitive opsin and 2 long-wavelength-sensitive (LWS) opsins, emphasizing the core role of LWS opsins in regulating predatory behaviors. Conclusions The high-quality genome assembly of the praying mantis provides a valuable repository for studying the evolutionary patterns of the mantis genomes and the gene expression profiles of insect predators.
引用
收藏
页数:14
相关论文
共 89 条
  • [1] The genome sequence of Drosophila melanogaster
    Adams, MD
    Celniker, SE
    Holt, RA
    Evans, CA
    Gocayne, JD
    Amanatides, PG
    Scherer, SE
    Li, PW
    Hoskins, RA
    Galle, RF
    George, RA
    Lewis, SE
    Richards, S
    Ashburner, M
    Henderson, SN
    Sutton, GG
    Wortman, JR
    Yandell, MD
    Zhang, Q
    Chen, LX
    Brandon, RC
    Rogers, YHC
    Blazej, RG
    Champe, M
    Pfeiffer, BD
    Wan, KH
    Doyle, C
    Baxter, EG
    Helt, G
    Nelson, CR
    Miklos, GLG
    Abril, JF
    Agbayani, A
    An, HJ
    Andrews-Pfannkoch, C
    Baldwin, D
    Ballew, RM
    Basu, A
    Baxendale, J
    Bayraktaroglu, L
    Beasley, EM
    Beeson, KY
    Benos, PV
    Berman, BP
    Bhandari, D
    Bolshakov, S
    Borkova, D
    Botchan, MR
    Bouck, J
    Brokstein, P
    [J]. SCIENCE, 2000, 287 (5461) : 2185 - 2195
  • [2] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [3] UniProt: the Universal Protein Knowledgebase in 2023
    Bateman, Alex
    Martin, Maria-Jesus
    Orchard, Sandra
    Magrane, Michele
    Ahmad, Shadab
    Alpi, Emanuele
    Bowler-Barnett, Emily H.
    Britto, Ramona
    Cukura, Austra
    Denny, Paul
    Dogan, Tunca
    Ebenezer, ThankGod
    Fan, Jun
    Garmiri, Penelope
    Gonzales, Leonardo Jose da Costa
    Hatton-Ellis, Emma
    Hussein, Abdulrahman
    Ignatchenko, Alexandr
    Insana, Giuseppe
    Ishtiaq, Rizwan
    Joshi, Vishal
    Jyothi, Dushyanth
    Kandasaamy, Swaathi
    Lock, Antonia
    Luciani, Aurelien
    Lugaric, Marija
    Luo, Jie
    Lussi, Yvonne
    MacDougall, Alistair
    Madeira, Fabio
    Mahmoudy, Mahdi
    Mishra, Alok
    Moulang, Katie
    Nightingale, Andrew
    Pundir, Sangya
    Qi, Guoying
    Raj, Shriya
    Raposo, Pedro
    Rice, Daniel L.
    Saidi, Rabie
    Santos, Rafael
    Speretta, Elena
    Stephenson, James
    Totoo, Prabhat
    Turner, Edward
    Tyagi, Nidhi
    Vasudev, Preethi
    Warner, Kate
    Watkins, Xavier
    Zellner, Hermann
    [J]. NUCLEIC ACIDS RESEARCH, 2023, 51 (D1) : D523 - D531
  • [4] Benson DA, 2013, NUCLEIC ACIDS RES, V41, pD36, DOI [10.1093/nar/gkl986, 10.1093/nar/gkp1024, 10.1093/nar/gks1195, 10.1093/nar/gkw1070, 10.1093/nar/gkq1079, 10.1093/nar/gkg057, 10.1093/nar/gkr1202, 10.1093/nar/gkn723, 10.1093/nar/gkx1094]
  • [5] Tandem repeats finder: a program to analyze DNA sequences
    Benson, G
    [J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (02) : 573 - 580
  • [6] Fast and sensitive protein alignment using DIAMOND
    Buchfink, Benjamin
    Xie, Chao
    Huson, Daniel H.
    [J]. NATURE METHODS, 2015, 12 (01) : 59 - 60
  • [7] Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
    Chalopin, Domitille
    Naville, Magali
    Plard, Floriane
    Galiana, Delphine
    Volff, Jean-Nicolas
    [J]. GENOME BIOLOGY AND EVOLUTION, 2015, 7 (02): : 567 - 580
  • [8] fastp: an ultra-fast all-in-one FASTQ preprocessor
    Chen, Shifu
    Zhou, Yanqing
    Chen, Yaru
    Gu, Jia
    [J]. BIOINFORMATICS, 2018, 34 (17) : 884 - 890
  • [9] The ABC gene family in arthropods: Comparative genomics and role in insecticide transport and resistance
    Dermauw, Wannes
    Van Leeuwen, Thomas
    [J]. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2014, 45 : 89 - 110
  • [10] De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
    Dudchenko, Olga
    Batra, Sanjit S.
    Omer, Arina D.
    Nyquist, Sarah K.
    Hoeger, Marie
    Durand, Neva C.
    Shamim, Muhammad S.
    Machol, Ido
    Lander, Eric S.
    Aiden, Aviva Presser
    Aiden, Erez Lieberman
    [J]. SCIENCE, 2017, 356 (6333) : 92 - 95