Crystal structure, Hirshfeld surface analysis, and computational insights into phenoxyacetohydrazones: Hydrogen-bonded dimers and p-stacking interactions

被引:0
作者
Capelini, Camila [1 ,2 ]
Carvalho, Samir A. [1 ]
Lima, Camilo Henrique da Silva [3 ]
Machado, Sergio de Paula [5 ]
Ramos, Lais G. [2 ]
da Silva, Edson F. [1 ]
da Silva, Everton Tomaz [4 ]
da Silva, Talis Uelisson [3 ]
de Souza, Katia R. [2 ]
Wardell, James L. [5 ]
Wardell, Solange M. S. V. [6 ]
机构
[1] Fundacao Oswaldo Cruz, Inst Tecnol Farmacos Farmanguinhos, BR-21041250 Rio De Janeiro, RJ, Brazil
[2] Inst Mil Engn, Secao Engn Quim, Lab Fis Quim Mat, Praca Gen Tiburcio 80, BR-22290270 Rio De Janeiro, Brazil
[3] Univ Fed Rio de Janeiro, Inst Quim, Ave Athos Silveira Ramos 149,Cidade Univ, BR-21941909 Rio De Janeiro, RJ, Brazil
[4] Inst Fed Educ Ciencia & Tecnol Rio de Janeiro, Unidade Duque de Caxias, Ave Republ Paraguai 120, BR-25050100 Duque De Caxias, RJ, Brazil
[5] Univ Aberdeen, Dept Chem, Old Aberdeen AB24 3UE, Scotland
[6] CHEMSOL, 1 Harcourt Rd, Aberdeen AB15 5NY, Scotland
关键词
acylhydrazones; NHCO-conformations; pi-interactions; X-ray crystallography; DFT calculations; HIGHLY EFFICIENT SYNTHESIS; N-ACYLHYDRAZONES; AROMATIC RINGS; CONFORMATION; ENERGY; HYDRAZONES;
D O I
10.1016/j.molstruc.2025.141752
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
X-ray crystallographic and theoretical study, including Hirshfeld surface analysis of four acylhydrazones, PhOCH2CONH-N--CH-C6H4-X-p (1: X = H; 2: X = F; 3: X =Cl; 4: X = Br), has been carried out: a larger number of this series of compounds 1 has recently been found to possess activity against Trypanosoma cruzi. In the solid state, the four molecules have the (E) arrangement about the C--N bond and the syn arrangement about the NHCO fragment. Two major sub-structures of each compound are present in the solid state: (i) symmetrical R22(8) dimers formed from pairs of classical N-H(hydrazinyl)& ctdot;O(carbonyl) hydrogen bonds and (ii) columns composed of parallel and equally spaced layers of single molecules. The short perpendicular separations of the layers and the overlaps of the delocalised -C(O)-NH-N--CH-C6H4- fragments of the compounds indicate extensive pi-interactions. Calculations, including Hirshfeld surface analysis, provide confirmation of these interactions. While extensive regions of pi-overlap are indicated in the columns, specific pi(C--N) & ctdot;pi(pH) and C-X & ctdot;pi(pH) interactions (X = F, Cl and Br) can be highlighted. Combination of the two major sub-structures results in one-dimensional, two-molecule-wide, infinite structures for all four compounds, with the 1 compound exhibiting a slight difference from the very similar structures of the halo derivatives. The only significant intermolecular interaction, which differs between 1 and the three halo-derivatives, 2-4 is the formation of C-X & ctdot;pi(pH) interactions, in which the halo substituent, in each case, resides above the centre of the phenyl ring. In 1, the hydrogen atom is close to the periphery of the ring: this reflects essentially the differences in the C-X bond lengths. In general, the very similar crystal structures for the three halo derivatives indicate that the significantly different properties of the halogen atoms have only small consequences on the overall crystal structures.
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页数:13
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共 58 条
  • [1] Synthesis, crystal structure, Hirshfeld surface analysis and DFT calculations of 2-[(2,3-dimethylphenyl)amino]-N′-[(E)-thiophen-2-ylmethylidene]benzohydrazide
    Albayati, Mustafa R.
    Kansiz, Sevgi
    Dege, Necmi
    Kaya, Savas
    Marzouki, Riadh
    Lgaz, Hassane
    Salghi, Rachid
    Ali, Ismat H.
    Alghamdi, Majed M.
    Chung, Ill-Min
    [J]. JOURNAL OF MOLECULAR STRUCTURE, 2020, 1205
  • [2] [Anonymous], 2019, Rigaku Oxford Diffraction
  • [3] [Anonymous], 2023, Oscail version 6 2023, Windows Software for crystallography and Molecular Modelling
  • [4] (Pyrazinecarbonyl)hydrazone halobenzaldehydes: supramolecular arrays generated by face to face stacking of ribbons, formed from C-H-O interactions
    Baddeley, Thomas C.
    Howie, R. Alan
    Lima, Camilo H. da Silva
    Kaiser, Carlos R.
    de Souza, Marcos V. N.
    Wardell, James L.
    Wardell, Solange M. S. V.
    [J]. ZEITSCHRIFT FUR KRISTALLOGRAPHIE, 2009, 224 (10): : 506 - 514
  • [5] Barone G.A., 2016, Gaussian 16, Revision C.01
  • [6] DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE
    BECKE, AD
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) : 5648 - 5652
  • [7] Synthesis and Biological Activity of N-Acylhydrazones
    Belyaeva, E. R.
    Myasoedova, Yu. V.
    Ishmuratova, N. M.
    Ishmuratov, G. Yu.
    [J]. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY, 2022, 48 (06) : 1123 - 1150
  • [8] PATTERNS IN HYDROGEN BONDING - FUNCTIONALITY AND GRAPH SET ANALYSIS IN CRYSTALS
    BERNSTEIN, J
    DAVIS, RE
    SHIMONI, L
    CHANG, NL
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 1995, 34 (15) : 1555 - 1573
  • [9] Phenoxyacetohydrazones against Trypanosoma cruzi
    Capelini, Camila
    de Souza, Katia R.
    Barbosa, Juliana M. C.
    Salomao, Kelly
    Sales Junior, Policarpo A.
    Murta, Silvane M. F.
    Wardell, Solange M. S. V.
    Wardell, James L.
    da Silva, Edson F.
    Carvalho, Samir A.
    [J]. MEDICINAL CHEMISTRY RESEARCH, 2021, 30 (09) : 1703 - 1712
  • [10] Anti-Tuberculosis Evaluation and Conformational Study of N-Acylhydrazones Containing the Thiophene Nucleus
    Cardoso, Laura N. F.
    Bispo, Marcelle L. F.
    Kaiser, Carlos R.
    Wardell, James L.
    Wardell, Solange M. S. V.
    Lourenco, Maria C. S.
    Bezerra, Flavio A. F. M.
    Soares, Rodrigo P. P.
    Rocha, Marcele N.
    de Souza, Marcus V. N.
    [J]. ARCHIV DER PHARMAZIE, 2014, 347 (06) : 432 - 448