Predictive performance of a centrosome-associated prognostic model in prognosis and immunotherapy of lung adenocarcinoma

被引:0
作者
Yan, Feng [1 ]
Guo, Qian [1 ]
Zheng, Rongbing [2 ,3 ]
Ying, Jiongming [1 ]
机构
[1] First Peoples Hosp Hangzhou Linan Dist, Dept Med Oncol, 548 Yijin St,Jincheng St, Hangzhou 311300, Zhejiang, Peoples R China
[2] Academician Expert Workstn Zhejiang Luoxi Med Tech, Hangzhou 311215, Peoples R China
[3] Zhejiang Luoxi Med Technol Co Ltd, Hangzhou 311215, Peoples R China
关键词
Centrosome; Lung adenocarcinoma; Prognosis; Immunity; Immunophenoscore; PROTEIN-KINASE-C; CELL-PROLIFERATION; CANCER; PROMOTES; SURVIVAL; BINDING; LZAP; SIGNATURE; SPINDLE; GENES;
D O I
10.1016/j.ab.2024.115731
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In recent years, mounting investigations have highlighted the pivotal role of centrosomes in cancer progression. In this study, we employed bioinformatics and statistics to establish a 13-centrosome-associated gene prognostic model for lung adenocarcinoma (LUAD) utilizing transcriptomic data from TCGA. Based on the Riskscore, patients were stratified into high- and low-risk groups. Through survival analysis and receiver operating characteristic curve analysis, our model demonstrated a consistent and robust prognostic capacity, which was further validated using the GEO database. Univariate/multivariate Cox regression analyses identified our model as an independent prognostic factor for LUAD patients. Subsequently, immunoinfiltration analysis showed that immune cell infiltration levels of aDCs, iDCs, Mast cells, and Neutrophils, as well as immune functionalities such as HLA, Type I IFN Response and Type II IFN Response, were markedly reduced in the high-risk group compared to the low-risk group. Finally, we conducted a drug screening to identify potential treatments for patients with different prognoses. We utilized the GDSC database and molecular docking techniques to identify small molecule compounds targeting the prognostic genes. In conclusion, our prognostic model exhibits robust and reliable predictive capability, and it may have important clinical implications in guiding treatment decisions for LUAD patients.
引用
收藏
页数:15
相关论文
共 95 条
[1]   Cell-Cycle Proteins Control Production of Neutrophil Extracellular Traps [J].
Amulic, Borko ;
Knackstedt, Sebastian Lorenz ;
Abu Abed, Ulrike ;
Deigendesch, Nikolaus ;
Harbort, Christopher J. ;
Caffrey, Brian E. ;
Brinkmann, Volker ;
Heppner, Frank L. ;
Hinds, Philip W. ;
Zychlinsky, Arturo .
DEVELOPMENTAL CELL, 2017, 43 (04) :449-+
[2]   Proteomic characterization of the human centrosome by protein correlation profiling [J].
Andersen, JS ;
Wilkinson, CJ ;
Mayor, T ;
Mortensen, P ;
Nigg, EA ;
Mann, M .
NATURE, 2003, 426 (6966) :570-574
[3]   Centriole Biogenesis: From Identifying the Characters to Understanding the Plot [J].
Banterle, Niccolo ;
Gonczy, Pierre .
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 33, 2017, 33 :23-49
[4]   FGFR3-TACC3 is an oncogenic fusion protein in respiratory epithelium [J].
Best, Sarah A. ;
Harapas, Cassandra R. ;
Kersbergen, Ariena ;
Rathi, Vivek ;
Asselin-Labat, Marie-Liesse ;
Sutherland, Kate D. .
ONCOGENE, 2018, 37 (46) :6096-6104
[5]   Estimating and comparing time-dependent areas under receiver operating characteristic curves for censored event times with competing risks [J].
Blanche, Paul ;
Dartigues, Jean-Francois ;
Jacqmin-Gadda, Helene .
STATISTICS IN MEDICINE, 2013, 32 (30) :5381-5397
[6]  
Burley SK, 2017, METHODS MOL BIOL, V1606, P627, DOI 10.1007/978-1-4939-7000-1_26
[7]   Evolution of systemic therapy for stages I-III non-metastatic non-small-cell lung cancer [J].
Chaft, Jamie E. ;
Rimner, Andreas ;
Weder, Walter ;
Azzoli, Christopher G. ;
Kris, Mark G. ;
Cascone, Tina .
NATURE REVIEWS CLINICAL ONCOLOGY, 2021, 18 (09) :547-557
[8]   miR-363-3p inhibits migration, invasion, and epithelial-mesenchymal transition by targeting NEDD9 and SOX4 in non-small-cell lung cancer [J].
Chang, Jingxia ;
Gao, Feng ;
Chu, Heying ;
Lou, Lili ;
Wang, Huaqi ;
Chen, Yibing .
JOURNAL OF CELLULAR PHYSIOLOGY, 2020, 235 (02) :1808-1820
[9]   Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade [J].
Charoentong, Pornpimol ;
Finotello, Francesca ;
Angelova, Mihaela ;
Mayer, Clemens ;
Efremova, Mirjana ;
Rieder, Dietmar ;
Hackl, Hubert ;
Trajanoski, Zlatko .
CELL REPORTS, 2017, 18 (01) :248-262
[10]  
Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12